Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5045 208 6e-49 seq2601 208 6e-49 seq6130 87.8 1e-12 >seq5045 Length=16147 Score = 208 bits (230), Expect = 6e-49 Identities = 412/602 (68%), Gaps = 12/602 (2%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || || || || | |||||||||| ||| ||||| || | ||||| Sbjct 9306 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 9365 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 | ||||| || | ||||| ||||| || || | | ||| | || | |||| Sbjct 9366 ATGAACTCGCCAGCACGCAGCCCTGTGACCTGCGCGACGAGTCGCGTCAACAGCGCGTAG 9425 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 || |||||||| || || || ||||| ||||| || | || | ||||| | |||||| Sbjct 9426 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCTGAGCGTTGGTACATCTGACAG 9485 Query 30044 GAGAGCTCTCCGT-CGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 |||||||| || | ||| ||||||||||| || | ||||||||| || || ||||| Sbjct 9486 GAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATGTGGCACGGCGGCAGCGCCAT 9544 Query 30103 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30162 | ||| |||||||| || ||| ||||||||||| || | ||||| | Sbjct 9545 CTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTTCGT 9604 Query 30163 CCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218 | ||| || || ||| | || |||||||| || ||| || |||||||| | Sbjct 9605 CTTGAGTTTGTGGATCAC----CTCCGCGAGCTGATCGACTCCCTGGCCAGAGTAGTCGG 9660 Query 30219 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30278 | ||| |||||||| ||||| || || | ||||||||| || ||||| ||||| | Sbjct 9661 CGTGCATCGTCGTGTACTTGGCTCCAAAGTGGCGCCACTGGAAGCCATACACTGGTCCGA 9720 Query 30279 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 | || || |||| | || ||| ||| | | || | | || | || || ||| Sbjct 9721 GATCGCCAGCTTCGCGATGTCCGAGGCCGATGCTCTCTAGGTATTCCTTCGATCCATTGC 9780 Query 30339 CGTCCCAGATCTTTACCCCCTTCT-CAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30397 | ||||||||||| | ||||| | | | | || |||| || || || |||| | Sbjct 9781 CATCCCAGATCTTGATACCCTTGTCCTGCAATGTC-TTGGCATTGGTATCGCCACTGATG 9839 Query 30398 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30457 |||||||||||||||||| |||| | ||| ||||| | |||||||||||| || ||| Sbjct 9840 AACCACAGCAGCTCCTCCGCGACACCGCGCCAGAAGACGCGCTTGGTCGTGAGCAGCGGA 9899 Query 30458 AA 30459 || Sbjct 9900 AA 9901 >seq2601 Length=2056 Score = 208 bits (230), Expect = 6e-49 Identities = 412/602 (68%), Gaps = 12/602 (2%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || || || || | |||||||||| ||| ||||| || | ||||| Sbjct 933 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 992 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 | ||||| || | ||||| ||||| || || | | ||| | || | |||| Sbjct 993 ATGAACTCGCCAGCACGCAGCCCTGTGACCTGCGCGACGAGTCGCGTCAACAGCGCGTAG 1052 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 || |||||||| || || || ||||| ||||| || | || | ||||| | |||||| Sbjct 1053 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCTGAGCGTTGGTACATCTGACAG 1112 Query 30044 GAGAGCTCTCCGT-CGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 |||||||| || | ||| ||||||||||| || | ||||||||| || || ||||| Sbjct 1113 GAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATGTGGCACGGCGGCAGCGCCAT 1171 Query 30103 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30162 | ||| |||||||| || ||| ||||||||||| || | ||||| | Sbjct 1172 CTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTTCGT 1231 Query 30163 CCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218 | ||| || || ||| | || |||||||| || ||| || |||||||| | Sbjct 1232 CTTGAGTTTGTGGATCAC----CTCCGCGAGCTGATCGACTCCCTGGCCAGAGTAGTCGG 1287 Query 30219 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30278 | ||| |||||||| ||||| || || | ||||||||| || ||||| ||||| | Sbjct 1288 CGTGCATCGTCGTGTACTTGGCTCCAAAGTGGCGCCACTGGAAGCCATACACTGGTCCGA 1347 Query 30279 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 | || || |||| | || ||| ||| | | || | | || | || || ||| Sbjct 1348 GATCGCCAGCTTCGCGATGTCCGAGGCCGATGCTCTCTAGGTATTCCTTCGATCCATTGC 1407 Query 30339 CGTCCCAGATCTTTACCCCCTTCT-CAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30397 | ||||||||||| | ||||| | | | | || |||| || || || |||| | Sbjct 1408 CATCCCAGATCTTGATACCCTTGTCCTGCAATGTC-TTGGCATTGGTATCGCCACTGATG 1466 Query 30398 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30457 |||||||||||||||||| |||| | ||| ||||| | |||||||||||| || ||| Sbjct 1467 AACCACAGCAGCTCCTCCGCGACACCGCGCCAGAAGACGCGCTTGGTCGTGAGCAGCGGA 1526 Query 30458 AA 30459 || Sbjct 1527 AA 1528 >seq6130 Length=72722 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 52761 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52818 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 38667 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 38610 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCA 52878 ||| | ||||||||||||||| ||| || | ||||| || |||||||||||||| | Sbjct 38609 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGTCTGCCCCGACCTCATCATGA 38550 Query 52879 ACCCCCACGCCTTTCC 52894 |||| |||| ||| || Sbjct 38549 ACCCGCACGGCTTCCC 38534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406265872443264