Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1220 167 5e-36 seq2702 163 7e-35 seq7397 93.3 1e-13 >seq1220 Length=9499 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | || || Sbjct 245 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCC 186 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || |||| || ||||||||| Sbjct 185 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 126 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| ||||| | ||| || || || ||||| ||||||||| Sbjct 125 TGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTC 66 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 65 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 34 >seq2702 Length=56295 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | || || Sbjct 26976 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 26917 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || || || ||||| | ||| ||||||||| Sbjct 26916 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCC 26857 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || ||| |||| || || || ||||| ||||||||| Sbjct 26856 TGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTC 26797 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || |||||||| || || | |||||| || Sbjct 26796 TTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 26762 >seq7397 Length=9624 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| |||||| | || || Sbjct 4208 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 4267 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| |||||||| ||||| || || || ||||| | |||| Sbjct 4268 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCT 4318 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || || || || ||| | || ||| || || || Sbjct 4384 CCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTATCCGAGGGCTCGACGTCC 4443 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||||||||| |||||||| ||||| || || | ||||||||| || Sbjct 4444 AGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTCTG 4493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159018454098080