Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1220 104 2e-17 seq2702 89.7 4e-13 >seq1220 Length=9499 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || | || || || |||| || Sbjct 243 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTC 184 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || || ||||||||||| | || | || ||| |||||| Sbjct 183 CAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTG 124 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||||| |||| ||| | | | || || || ||||||||| | |||||| | | Sbjct 123 AATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCT 65 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || || ||||| ||||| Sbjct 64 TGCCCGTCAGCGTCTTCACGAAGATCTGCAT 34 >seq2702 Length=56295 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || || | || || || | Sbjct 26980 GCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 26921 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || |||||||| || | || | | ||| || Sbjct 26920 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTT 26861 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||||| |||| | | | || | | || | ||| ||||| | ||||| Sbjct 26860 GTCCTGGATCTTCTGCTTGA-CATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGA 26802 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | | || || ||||| || || || ||||| ||||||||||| Sbjct 26801 TCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTAC 26759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429498526097696