Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7665 172 1e-37 seq1220 149 1e-30 seq2429 140 8e-28 seq2702 131 4e-25 seq7166 113 1e-19 seq5795 113 1e-19 seq5835 109 1e-18 seq7000 100 7e-16 >seq7665 Length=2109 Score = 172 bits (190), Expect = 1e-37 Identities = 208/283 (73%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||||| || ||||||| ||||||||| | | ||||| | ||| ||| | | |||| Sbjct 288 TATATTTGATTTTTGGTGCTTTTTCTGGTGTAGTTGGTACAACATTATCTCTTTTAATAA 347 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | | |||||||| || ||| |||||| || | || || ||| | || || | Sbjct 348 GAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAACCACCATTTATATAATG 407 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 || || |||| || ||||| || | ||||||||||| | |||||||| || | || | Sbjct 408 TTGTTGTTACTGCACATGCTTTCTTAATGATTTTCTTCATGGTTATGCCTATTTTAATTG 467 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | ||||| || || || || || ||||||||||| |||||||| |||||||| ||||| | Sbjct 468 GAGGTTTTGGTAACTGGTTTGTACCTTTAATGATAGGTGCTCCAGATATGGCGTTTCCTA 527 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| |||||||| ||| |||| || || ||||| Sbjct 528 GAATGAATAATATTAGTTTTTGGTTATTACCACCATCATTATT 570 Score = 100 bits (110), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 ||||||||| |||| | | ||||||||| ||||||| ||| | || || | || ||| Sbjct 789 AATGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATGTTATAAATGGTTGAAAGAAAA 730 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | || || ||||||| | |||||||||||| || |||||||| Sbjct 729 TTAATAGCACCTAATAATGATGAAATACCTGATAAATGTAAACTAAAAATAGCTAAATCT 670 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || |||||||| || || || Sbjct 669 ACTGAAGGACCTGAATGTGCTTGTACACTTGA---TAATGGTGGGTAAACAGTCCAACCT 613 Query 371542 GT 371543 || Sbjct 612 GT 611 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| ||||| ||||| |||||||||||||| || | | |||||| ||||| || || Sbjct 967 TTCAGGGTGACCGAAAAACCAGAATAAATGTTGGTATAATACAGGATCACCTCCACCAGA 908 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| | || |||||| ||||||||||||||||| |||| Sbjct 907 AGGATCATAGAAAGAAGTATTCAAATTTCTATCAGTTAATAACA 864 >seq1220 Length=9499 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || || Sbjct 255 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGT 196 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 195 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCC 136 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||||| || ||||| | ||| || | |||||||| | Sbjct 135 CTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 76 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 75 CGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 34 >seq2429 Length=2889 Score = 140 bits (154), Expect = 8e-28 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 |||||||||||||||||||||||| || || |||||||| ||||| |||||||| ||||| Sbjct 1055 GAATATTTGACCATCAGTAATAGAAATTACGTTTGTAGGAATATATGCAGAAACGTCACC 996 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | ||||||||| ||||||| ||| |||||||| | |||||||| Sbjct 995 AGCTTGAGTTTCAATAACAGGTAAAGCTGTTAATGAACCACCACCTATTTTTTTATT 939 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || ||||| |||||||||| | |||| |||||||||||||||||||| ||||||||| || Sbjct 738 GCTCCATATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGAAAACATGCTGTA 797 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| ||||||| Sbjct 798 ATTTTTTATGATGATTTATCTAAACAA 824 >seq2702 Length=56295 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || | | || | || || Sbjct 26976 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 26917 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || || || |||||||| Sbjct 26916 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCC 26857 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| ||| || ||| |||| || | || ||||| | |||||||||| Sbjct 26856 TGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTC 26797 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| ||| || | ||| | ||||| || Sbjct 26796 TTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 26762 >seq7166 Length=1408 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| ||| | || ||||| Sbjct 730 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTTTTTTAAAGGCAG 788 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 789 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 832 Score = 102 bits (112), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 1396 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 1337 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 1336 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 1277 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 |||||||||||| || || |||||| Sbjct 1276 AACGCGTTAGCTTGAT--ATCTAAAAA 1252 >seq5795 Length=3727 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 1593 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 1535 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 1534 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 1491 Score = 102 bits (112), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 927 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 986 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 987 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 1046 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 |||||||||||| || || |||||| Sbjct 1047 AACGCGTTAGCTTGAT--ATCTAAAAA 1071 >seq5835 Length=2728 Score = 109 bits (120), Expect = 1e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || || ||| || |||| || ||||| || | ||||||||||| | |||||||| || Sbjct 2211 TATAATGTTGTTGTTACTGCACATGCTTTCTTAATGATTTTCTTCATGGTTATGCCTATT 2152 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | || || ||||| || || || || || ||||||||||| |||||||| |||||||| Sbjct 2151 TTAATTGGAGGTTTTGGTAACTGGTTTGTACCTTTAATGATAGGTGCTCCAGATATGGCG 2092 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTA 7710 ||||| || | || ||| |||||||| ||| Sbjct 2091 TTTCCTAGAATGAATAATTATAGTTTTTGGTTA 2059 >seq7000 Length=1045 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||||| |||| ||||||||||| ||||||| ||||||| ||||| | | Sbjct 811 AGGTGGCACAGAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGG 752 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 751 TAACATGATGTATAGGGTCTGACAC 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192393808480448