Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5045 165 7e-36 seq2601 165 7e-36 seq6130 87.8 1e-12 >seq5045 Length=16147 Score = 165 bits (182), Expect = 7e-36 Identities = 400/605 (66%), Gaps = 18/605 (3%) Strand=Plus/Plus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 ||||| | | | || || || || ||||| ||||||| ||| || || || | |||||| Sbjct 9306 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 9365 Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755 | ||||| || | ||||| ||||| || || | | ||| | || | |||| Sbjct 9366 ATGAACTCGCCAGCACGCAGCCCTGTGACCTGCGCGACGAGTCGCGTCAACAGCGCGTAG 9425 Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815 || |||||||| || ||||| ||||| ||||| || |||| | ||||| | ||| || Sbjct 9426 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCTGAGCGTTGGTACATCTGACAG 9485 Query 29816 GAGAGCTCTCCGT-CGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGC 29871 |||||||| || | ||| ||||||||||| | ||||| |||||||| || || || Sbjct 9486 GAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATG---TGGCACGGCGGCAGCGC 9541 Query 29872 CATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 ||| | ||| |||||||| || ||| ||||||||||| || | ||||| Sbjct 9542 CATCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTT 9601 Query 29932 GTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT 29987 || ||| || || ||| | || |||||||| || ||| || ||||||| Sbjct 9602 CGTCTTGAGTTTGTGGATCAC----CTCCGCGAGCTGATCGACTCCCTGGCCAGAGTAGT 9657 Query 29988 CTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30047 | | | || || | ||||||||| || ||||| |||| Sbjct 9658 CGGCGTGCATCGTCGTGTACTTGGCTCCAAAGTGGCGCCACTGGAAGCCATACACTGGTC 9717 Query 30048 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30107 | || || || |||| | || ||| ||| | | || | | || | || || | Sbjct 9718 CGAGATCGCCAGCTTCGCGATGTCCGAGGCCGATGCTCTCTAGGTATTCCTTCGATCCAT 9777 Query 30108 TGGCGTCCCAGATCTTTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30166 || | ||||||||||| | ||||| | | | | || |||| || || || ||| Sbjct 9778 TGCCATCCCAGATCTTGATACCCTTGTCCTGCAATGTC-TTGGCATTGGTATCGCCACTG 9836 Query 30167 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30226 | ||||||||||||||||||| |||| | ||| ||||| | |||||||||||| || Sbjct 9837 ATGAACCACAGCAGCTCCTCCGCGACACCGCGCCAGAAGACGCGCTTGGTCGTGAGCAGC 9896 Query 30227 GGAAA 30231 ||||| Sbjct 9897 GGAAA 9901 >seq2601 Length=2056 Score = 165 bits (182), Expect = 7e-36 Identities = 400/605 (66%), Gaps = 18/605 (3%) Strand=Plus/Plus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 ||||| | | | || || || || ||||| ||||||| ||| || || || | |||||| Sbjct 933 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 992 Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755 | ||||| || | ||||| ||||| || || | | ||| | || | |||| Sbjct 993 ATGAACTCGCCAGCACGCAGCCCTGTGACCTGCGCGACGAGTCGCGTCAACAGCGCGTAG 1052 Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815 || |||||||| || ||||| ||||| ||||| || |||| | ||||| | ||| || Sbjct 1053 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCTGAGCGTTGGTACATCTGACAG 1112 Query 29816 GAGAGCTCTCCGT-CGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGC 29871 |||||||| || | ||| ||||||||||| | ||||| |||||||| || || || Sbjct 1113 GAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATG---TGGCACGGCGGCAGCGC 1168 Query 29872 CATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 ||| | ||| |||||||| || ||| ||||||||||| || | ||||| Sbjct 1169 CATCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTT 1228 Query 29932 GTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT 29987 || ||| || || ||| | || |||||||| || ||| || ||||||| Sbjct 1229 CGTCTTGAGTTTGTGGATCAC----CTCCGCGAGCTGATCGACTCCCTGGCCAGAGTAGT 1284 Query 29988 CTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30047 | | | || || | ||||||||| || ||||| |||| Sbjct 1285 CGGCGTGCATCGTCGTGTACTTGGCTCCAAAGTGGCGCCACTGGAAGCCATACACTGGTC 1344 Query 30048 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30107 | || || || |||| | || ||| ||| | | || | | || | || || | Sbjct 1345 CGAGATCGCCAGCTTCGCGATGTCCGAGGCCGATGCTCTCTAGGTATTCCTTCGATCCAT 1404 Query 30108 TGGCGTCCCAGATCTTTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30166 || | ||||||||||| | ||||| | | | | || |||| || || || ||| Sbjct 1405 TGCCATCCCAGATCTTGATACCCTTGTCCTGCAATGTC-TTGGCATTGGTATCGCCACTG 1463 Query 30167 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30226 | ||||||||||||||||||| |||| | ||| ||||| | |||||||||||| || Sbjct 1464 ATGAACCACAGCAGCTCCTCCGCGACACCGCGCCAGAAGACGCGCTTGGTCGTGAGCAGC 1523 Query 30227 GGAAA 30231 ||||| Sbjct 1524 GGAAA 1528 >seq6130 Length=72722 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 53525 CCAGAGATGGGCGACAAGTTT-GCATCCTTCACGGCGCAAAAGGGGACATGCGGAGCGGT 53583 || ||||| ||||||||||| ||| | |||||| || ||||| ||||| || | Sbjct 38667 CCCGAGATCGGCGACAAGTTCAGCAGTCGCCACGGC-CAGAAGGGCGTGTGCGGCACGAT 38609 Query 53584 CCTGACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAA 53643 || | |||||||||||||| ||| || | ||||| || |||||||||||||| || Sbjct 38608 CCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGTCTGCCCCGACCTCATCATGAA 38549 Query 53644 CCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 ||| |||| ||| || | | |||||||| Sbjct 38548 CCCGCACGGCTTCCCGAGCCGCATGACGGT 38519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406118688574912