Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2702 185 2e-41 seq1220 179 8e-40 seq7209 127 4e-24 seq5583 104 5e-17 seq7397 93.3 9e-14 >seq2702 Length=56295 Score = 185 bits (204), Expect = 2e-41 Identities = 187/241 (78%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 26992 ACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 26933 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| || || || || || Sbjct 26932 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 26873 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||||| || | || || ||||||||| |||| Sbjct 26872 GATTCCCTCCTTGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGA 26814 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACA 283110 | ||||| ||||||||||| || |||| |||||| ||||| |||||||| || | |||| Sbjct 26813 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTACCTACA 26754 Query 283111 A 283111 | Sbjct 26753 A 26753 >seq1220 Length=9499 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| | Sbjct 260 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 201 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| |||| Sbjct 200 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 141 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||||| ||| | ||||| | |||||| | || || Sbjct 140 ATGCCCTCCTTGTCCTGAATCTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 82 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 81 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 34 >seq7209 Length=39369 Score = 127 bits (140), Expect = 4e-24 Identities = 677/1059 (64%), Gaps = 57/1059 (5%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| || Sbjct 15290 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAGG 15349 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| ||||||||||| |||||||| || ||||| || | |||||| || ||| Sbjct 15350 TGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 15409 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || ||||| || Sbjct 15410 TTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATGAGCGTCGAC 15469 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGATACCTGGGCA-TT 316400 || || || ||||| || | |||| |||| | ||| |||||| ||| | Sbjct 15470 TTACCGGCACCGTTGGGGCCGATGACAGCGATACGCGAGGCGAGCGA-------GCACGT 15522 Query 316401 CACGT---TGTC---GAAGACCAGTTTGTCCGTCCCAGGATACTTG-AAACCCACCCCGC 316453 ||||| |||| || | | ||||| ||||| |||| | | || || Sbjct 15523 CACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAGCAGTTCG- 15581 Query 316454 GAAGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGGGTTCGG 316510 || ||||| ||| || |||| ||||| | | || || || || || | Sbjct 15582 TCAGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCAGCAAGGAAACCAGGCTCAG 15638 Query 316511 GGAATTTCCAC--GTAGTCTTC-GTCTCGGCGAGCGTGTAGTA--ACTTGCAGATTCGGG 316565 |||| | || | || | | | || | ||| |||||| |||| | || || Sbjct 15639 GGAACGTGAACTTGAAGGCAGCAGCCT---CAAGCTCGTAGTACGTCTTG--GCCTCCGG 15693 Query 316566 ACGCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTC 316625 || ||| ||||| || || || || || || ||| |||||||||| |||| || Sbjct 15694 CTTCTGCTTGACGAACTCAGAGAGGTTACCCTTGTACGTCTTCAGCTTGCGGTT---CTC 15750 Query 316626 GTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCAC 316685 ||| |||||||| || ||||| | |||||||||||||| ||||| || ||||| | Sbjct 15751 GTAGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACAATGAG 15810 Query 316686 ACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGA 316745 | | ||| | ||| | || ||||| ||||| | || || |||| Sbjct 15811 CGACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATC 15870 Query 316746 AAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGC 316805 | ||||| ||||| || || || || || | | || | || ||||| || || || Sbjct 15871 CAAGTGGTTCGTCGGCTCATCGAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGC 15930 Query 316806 GAGAGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAATCG--GGGCA--GATTGGC 316861 | |||||||||| ||||| || || || || | | || |||| | || Sbjct 15931 CAACTCAAGCTTCATCTTCCAACCACCCGAGAGGG----CACCGACAGGCATGGCCTGCA 15986 Query 316862 GCTCAACATCAAAGCCAACTGATTCGAGAGTA-GACAC-GATTTTTTCACGAGACCATGT 316919 ||| | ||||| || ||| ||| | | ||| || | ||||| | || | Sbjct 15987 TCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCG-GCAGG- 16042 Query 316920 GTTTTCTTTAACTTGG--TCGTCATTGGCAATGAAGTCAACGATAGACGTGTTAGATTCG 316977 ||||| | || |||||| | |||||||| | || | | || || Sbjct 16043 ---TTCTTGA---GGGCCTCGTCACAGAACATGAAGTCGATGACCGGAAGCTCAGCCTCC 16096 Query 316978 GATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCT 317037 | | ||||| ||||| || | | || || || ||||| ||| ||||| || Sbjct 16097 TCAGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGCGTAGGGAAGCCC 16156 Query 317038 TCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCG 317097 || | ||| |||||| || || | ||| || |||||||| || ||| || |||||| Sbjct 16157 TCGAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCG 16216 Query 317098 CAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTA 317157 || ||||| || || | || ||| || || |||| ||||||||| |||||| || Sbjct 16217 CACAGACCGTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATA 16276 Query 317158 CCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||||| || || || |||||||| || | || || ||| Sbjct 16277 CCACCGTAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 16315 >seq5583 Length=27463 Score = 104 bits (114), Expect = 5e-17 Identities = 193/282 (68%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||||| ||||| | | |||||| ||||||||| || ||||||| || |||||||| Sbjct 18223 CGTGAAGATGTAGCGCGGACTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCAAACTG 18282 Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 ||| || ||| | ||||||| |||||||| ||||| ||||| || || Sbjct 18283 TCCCGATGGATAGAGCAGCGGCAGGTTGTTGGCGCCGACGTAGTCCTGCGCCATGTTGAC 18342 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958 ||| ||| || || || ||||||||||||| || || |||| || | || || Sbjct 18343 GATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCCGTGTGCTCACTGCAGTAGCC 18402 Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTT---GAATGCGGAATACAA 274015 | || ||| || ||||| || || |||||| || ||||| | | ||| | | Sbjct 18403 AGCGAGCTGCGCGACCTTGACTTCCTTCGTCAGCTTGCGCTTCAGGCACGCG---AAGAG 18459 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 |||||| ||||||||| ||| | || || || || || || Sbjct 18460 CACCTTGCGCTGCGAGACCTTCAGGCCGTCGACCACGGACGG 18501 >seq7397 Length=9624 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 4192 ACCACCACGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 4251 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||| |||||||| ||||| || || || ||||| ||||||| || || || || Sbjct 4252 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 4305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| |||||||| ||| || || | || || | ||||| | ||||| Sbjct 4382 TACCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATGCTATCCGAGGGCTCGACG 4440 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| ||||| | ||||| ||||| |||||||||||| Sbjct 4441 TCCAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTC 4491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046618605176768