Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2702 143 6e-29 seq1220 141 2e-28 seq7397 87.8 4e-12 >seq2702 Length=56295 Score = 143 bits (158), Expect = 6e-29 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || ||||| || ||||| || || || |||||||| ||||| | Sbjct 26757 AGGTAAAGATGC---AGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACG 26813 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || |||| ||| || || ||||| || ||||| |||||||| || ||||||| Sbjct 26814 TCGAGCCTTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCC 26873 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 ||||||| ||||| || || ||||||||||| || |||||||| || || | || || Sbjct 26874 CTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCT 26933 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || || || || || Sbjct 26934 CGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGT 26973 >seq1220 Length=9499 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| ||||| ||||| || ||| Sbjct 37 CAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGAC 96 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || |||||||||||||| || || || || ||||||||||| Sbjct 97 TCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCAGCAG 156 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || | || || ||| || Sbjct 157 CGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAACATC 216 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 217 CAGAAGGAGTCGACGCTGCACCTGGT 242 >seq7397 Length=9624 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||||||||| ||||| || || ||||||||||| || |||||||| || || | Sbjct 4318 AGGAATCCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCG 4259 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| | || || ||| |||| || || || || ||||| || || Sbjct 4258 CACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGT 4211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203592518128448