Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq350 203 7e-47 seq1 100 6e-16 >seq350 Length=38155 Score = 203 bits (224), Expect = 7e-47 Identities = 691/1057 (65%), Gaps = 51/1057 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 19330 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAG 19389 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 19390 GTGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 19449 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| || | || | | ||||| |||| ||| ||||| || Sbjct 19450 CTTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGA 19509 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| ||| | || | || | ||| |||||| || | | Sbjct 19510 CTTACCGGCACCGTTCGGGCCGATAACGGCAATACGCGAGGCCAGCGA-ACACG-----T 19563 Query 319230 CACGTTG---TCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 319283 ||||||| ||| ||| | || || || || |||| | || || || Sbjct 19564 CACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAG-CAGTTCG 19622 Query 319284 T-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGG 319339 | || ||||| ||| || | ||| ||||| | | ||||| || ||||| | Sbjct 19623 TGAGACGAATGATCGGCTTACCCTTGTTCT---TGATATCAGCAAGGAAACCCGGCTCAG 19679 Query 319340 GGAACTTCCACGTG--GTCTTCGTC-TCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 319396 ||||| | || || | | || | || ||| ||||||| || | || || Sbjct 19680 GGAACGTGAACTTGAAGGCAGCGGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGCT 19736 Query 319397 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 319456 || ||| ||||||||||| || || ||||||||| |||| ||||| |||| |||| Sbjct 19737 TCTGCTTGACGAACTCGGAGAGGTTACCCTTGTACGTCTTGAGCTTACGGTT---CTCGT 19793 Query 319457 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 | ||||| || ||||| || | ||||||||| || |||||||| ||||| || | Sbjct 19794 AGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACGATGAGCG 19853 Query 319517 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAA 319576 ||| |||| | | ||| | | ||||| || | |||| | ||||| |||| | Sbjct 19854 ACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCCA 19913 Query 319577 GATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 319636 ||||| |||||||| |||||||| || | | || |||| |||||| ||||| || | Sbjct 19914 AGTGGTTCGTCGGCTCATCAAGAAGGAGAATATCAGCCTTCATGAGCATGGCACGGGCCA 19973 Query 319637 GAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAA 319696 |||| ||||| ||||| || || | |||| | |||| |||| || | Sbjct 19974 ACTCGAGCTTCATCTTCCAACCACC--AGAGAGGGCACCGACAGGCA---TGGC-CTGCA 20027 Query 319697 TATC------AAAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAAT 319748 | || ||||| || || ||| | || || || || ||||| | | | Sbjct 20028 TCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCGGC---AG 20082 Query 319749 GTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGA 319808 ||| ||| | || ||| | ||||||||||||| | | || || Sbjct 20083 GTT---CTTGAGGGCCTCGTCACAGAACATGAAGTCAATGACCGGAAGCTCAGCCTCCTC 20139 Query 319809 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTC 319868 | | ||| | ||| || ||| | | || || | ||||| | ||||| || || Sbjct 20140 AGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGGGTCGGGAAACCCTC 20199 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 20200 GAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCGCA 20259 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||||||| || || || ||| || || | ||||||||| ||||| | || Sbjct 20260 GAGACCGTAGCGGTGGCCACGCTTGAGGCGGAGACGGGCGTTGTTCAGCAGAATCATACC 20319 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||| || || || || || || || | || |||||| Sbjct 20320 ACCGTACGCGAGCGAGAACTCGCAGTTGCAGAGATCC 20356 Score = 190 bits (210), Expect = 4e-43 Identities = 464/691 (67%), Gaps = 29/691 (4%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 12354 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAG 12413 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 12414 GTGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 12473 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| || | || | | ||||| |||| ||| ||||| || Sbjct 12474 CTTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGA 12533 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| ||| | || | || | ||| |||||| || | | Sbjct 12534 CTTACCGGCACCGTTCGGGCCGATAACGGCAATACGCGAGGCCAGCGA-ACACG-----T 12587 Query 319230 CACGTTG---TCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 319283 ||||||| ||| ||| | || || || || |||| | || || || Sbjct 12588 CACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAG-CAGTTCG 12646 Query 319284 T-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGG 319339 | || ||||| ||| || | ||| ||||| | | ||||| || ||||| | Sbjct 12647 TGAGACGAATGATCGGCTTACCCTTGTTCT---TGATATCAGCAAGGAAACCCGGCTCAG 12703 Query 319340 GGAACTTCCACGTG--GTCTTCGTC-TCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 319396 ||||| | || || | | || | || ||| ||||||| || | || || Sbjct 12704 GGAACGTGAACTTGAAGGCAGCGGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGCT 12760 Query 319397 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 319456 || ||| ||||||||||| || || ||||||||| |||| ||||| |||| |||| Sbjct 12761 TCTGCTTGACGAACTCGGAGAGGTTACCCTTGTACGTCTTGAGCTTACGGTT---CTCGT 12817 Query 319457 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 | ||||| || ||||| || | ||||||||| || |||||||| ||||| || | Sbjct 12818 AGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACGATGAGCG 12877 Query 319517 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAA 319576 ||| |||| | | ||| | | ||||| || | |||| | ||||| |||| | Sbjct 12878 ACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCCA 12937 Query 319577 GATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 319636 ||||| |||||||| |||||||| || | | || |||| |||||| ||||| || | Sbjct 12938 AGTGGTTCGTCGGCTCATCAAGAAGGAGAATATCAGCCTTCATGAGCATGGCACGGGCCA 12997 Query 319637 GAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 |||| ||||| ||||| || || || || Sbjct 12998 ACTCGAGCTTCATCTTCCAACCACCAGAGAG 13028 >seq1 Length=655053 Score = 100 bits (110), Expect = 6e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 281741 CGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTG 281800 |||||||||||| | | ||| ||| ||| || || |||||||| | || |||||||| Sbjct 287142 CGTGAAGATATAGCGCGGACTNGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 287083 Query 281801 ACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGAC 281860 ||| ||| ||| | | | ||| || ||||| || ||||| |||| |||||| Sbjct 287082 TCCCGACGGATACAGCAANGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGAC 287023 Query 281861 GATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACA-TAAC 281919 || ||| || ||||| |||| |||||||| || || |||| || || ||| |||| Sbjct 287022 AATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAAC 286964 Query 281920 CACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTT 281962 || || ||| || ||||| || || |||| ||||| || Sbjct 286963 CAGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTT 286921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057807844382960