Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 313 3e-80 seq575 145 8e-30 seq150 145 8e-30 seq436 141 1e-28 seq58 141 1e-28 seq378 122 9e-23 seq43 98.7 1e-15 >seq6 Length=416345 Score = 313 bits (346), Expect = 3e-80 Identities = 555/797 (70%), Gaps = 20/797 (3%) Strand=Plus/Plus Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGA 116703 |||||||| ||||| |||||| |||||||| | || ||| | ||||| || || | Sbjct 381723 ATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCGTGCACGAC 381782 Query 116704 CACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | | || |||||| | | | | |||||||||||| | || |||||||||||||| || Sbjct 381783 CTCAAG-GACTGGAACAACCTCACGGACAACGAGCGCTACTTTATCAAGCACGTGCTCGC 381841 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-G 116822 || ||||| ||||| || ||||||||||||||||| || | | ||| ||| | Sbjct 381842 GTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGNGATGAACTTCAG-CAGCG 381900 Query 116823 AGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGC 116882 |||||||||| | |||||||| |||||||||||||| ||||| || || |||||| | | Sbjct 381901 AGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGAACATCC 381960 Query 116883 ACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAG 116938 ||||||| |||| ||| ||||||||||||||| | | | || || |||| Sbjct 381961 ACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGTAGAAGAAC 382020 Query 116939 CTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCG 116998 | || || | ||||||||||||| || || || | |||||||| | |||||| Sbjct 382021 CACC--TTCTNCGCGACCATCGAGACGATCCCCTGTGTGCAGAAGAAGGCCCACTGGGCG 382078 Query 116999 CTGCGCTGGATCGCCGGC-AGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGC 117057 || ||| || | | | ||||| |||| |||||| | || || ||||| || Sbjct 382079 CTCAAGTGGTGCGACTTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGC 382138 Query 117058 CGTCGAGGGCGTCTT-CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCG 117116 ||||||||| |||| ||| |||||| ||| | | || || ||||||||||| |||| Sbjct 382139 TGTCGAGGGCATCTTACTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCG 382198 Query 117117 GCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATT 117176 |||| ||||| ||||| | ||| |||||||||||||| | ||||||||||| || | Sbjct 382199 GCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCACT 382258 Query 117177 GCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCG 117233 ||||||| || || ||||| | ||||| ||| || || | | ||| Sbjct 382259 GCGACTTCGCGTGCCTGCTGTACTCCAAGCTCGCCAACAAGCTCCC---CGAGTCTCGCA 382315 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 || |||||| | ||| || ||||| |||||| || ||| || || |||| | Sbjct 382316 TCCACGAGATCATTCGCGATGCTGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCC 382375 Query 117294 CGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCC 117352 ||||| || | || | || | || | |||| || ||||| |||||| |||| Sbjct 382376 CGGTGGAGCTCATNGGTATGAACT-CGTCTCTCATGTGCCAGTACATTGAGTTCTGCGCC 382434 Query 117353 GACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGAC 117412 || | || || | || ||| | || |||||| |||||| | | |||||| | ||| Sbjct 382435 GATCGCCTCCTCCACGCGCTTGGCGTTGCCAAGATCTACAAGGTGTCGAACCCGTTCGAC 382494 Query 117413 TTTATGAACCTCATCTC 117429 | ||| || | ||||| Sbjct 382495 TGGATGGACATGATCTC 382511 >seq575 Length=11535 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| | |||||||| | | Sbjct 1789 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCGTCG 1848 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| ||||||||||| ||||||| Sbjct 1849 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 1907 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 1908 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAA 1967 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 1968 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 2016 >seq150 Length=112013 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || ||||| |||||||| || ||||| |||| ||||| | Sbjct 82607 AAGATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACACTCGATGTCGAGCCG 82548 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | || |||| ||||| ||||||||||| |||| Sbjct 82547 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGA 82489 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||| Sbjct 82488 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTA 82429 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 82428 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 82377 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| | |||||||| | | Sbjct 90667 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCGTCG 90726 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| ||||||||||| ||||||| Sbjct 90727 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 90785 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 90786 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAA 90845 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 90846 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 90894 >seq436 Length=23449 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 1082 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 1023 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| | || || | ||||| ||||| ||||| |||| Sbjct 1022 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 963 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| ||||| || || | ||||| ||| ||||| Sbjct 962 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTA 903 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | ||||| || || ||| | ||| || | || || Sbjct 902 CAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGTGGTGG 852 >seq58 Length=197190 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 85166 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 85107 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| | || || | ||||| ||||| ||||| |||| Sbjct 85106 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 85047 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| ||||| || || | ||||| ||| ||||| Sbjct 85046 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTA 84987 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | ||||| || || ||| | ||| || | || || Sbjct 84986 CAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGTGGTGG 84936 >seq378 Length=32279 Score = 122 bits (134), Expect = 9e-23 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 ||| | || |||| ||||| ||||||||||| |||||||||| || || |||| ||| Sbjct 21 AAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTGATCTTCGCT 80 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| |||||||| || | ||||| || ||||||||||||||||||||| | ||| Sbjct 81 GGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAACATCCAGAAGGAGTCGACG 140 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || ||| |||| || | || ||| Sbjct 141 CTGCACCTGGTGCTGCGTCTGCGTGGTGGC 170 >seq43 Length=242114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| ||||| || || |||| ||| ||||| ||||| || |||| ||| Sbjct 82863 GGAATCCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGC 82804 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | |||||||| || ||| | ||| || | Sbjct 82803 ACGCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTGCGT 82744 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 82743 GGTGGTGGC 82735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211523233920