Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq12 159 3e-34 seq575 136 3e-27 seq150 136 3e-27 seq436 131 1e-25 seq58 131 1e-25 seq378 100 2e-16 >seq12 Length=344370 Score = 159 bits (176), Expect = 3e-34 Identities = 528/816 (65%), Gaps = 16/816 (2%) Strand=Plus/Plus Query 132916 TGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCG 132975 |||||| || ||||| ||||| || || |||| ||||||||| ||||| ||| || Sbjct 161651 TGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACG 161710 Query 132976 ACACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGA 133035 || | | || || ||||||| | || ||||| || || || ||| Sbjct 161711 TCAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTGAGCGACTGGCTTTGGCAAATGT 161770 Query 133036 AAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCT 133095 | | | |||||||||||||| | | | ||| ||||||||||| |||||| Sbjct 161771 AGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCCACACCGTCT 161830 Query 133096 TGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGG 133155 || | | ||| || | || || || | ||||||||| || |||| ||| Sbjct 161831 TGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCGT 161890 Query 133156 CCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGA 133215 || |||| ||| |||| || || || | ||| |||| ||||| ||| | || | | Sbjct 161891 GCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATNA 161950 Query 133216 GATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGAC 133274 | |||| ||| || | | |||| |||||| || || ||||| | | || | || | | Sbjct 161951 GGTACTTGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTC 162009 Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 |||||||| |||| || |||||||||||||| |||||||| |||| |||||| ||||| Sbjct 162010 GTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATC 162069 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 ||| | || || ||||| | |||||||||| | | || || | || | Sbjct 162070 GGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCC 162129 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||||| || | ||| | || ||| | || | | ||| | || Sbjct 162130 CAGTCCCAGAG---GCCGGA-----CGTCGGCGT----GACGCCCCACATGTCGTACTGG 162177 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 || || ||| ||||||| || | || ||| | || || |||| || || Sbjct 162178 AAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCG 162237 Query 133515 AGCTCGCAGCTA-GCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGAC 133573 ||||| || | | ||||||| ||| | ||||| | || || ||| | ||||| Sbjct 162238 AGCTC-CATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAG 162296 Query 133574 GAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACC 133633 | || |||||||| || | ||| | | | || | |||||||| || | ||| Sbjct 162297 CTCGCGNGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACC 162356 Query 133634 CTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGG 133693 ||| | ||||| |||||| || || || ||||| | ||| | ||||| | || Sbjct 162357 CTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCGGCCTCGGGGATCGG 162416 Query 133694 ATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 |||| ||||| ||||||| ||||||||| ||||| Sbjct 162417 GTAGTAGTTGATNTCGATGACCTTGTTGAGGTTGCG 162452 >seq575 Length=11535 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||| ||| Sbjct 2001 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATC 1942 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 1941 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 1882 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| |||||| || | || | ||| Sbjct 1881 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATCGT 1822 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| ||||| || || ||||| |||||||||| Sbjct 1821 CTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGG 1787 >seq150 Length=112013 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||| ||| Sbjct 82392 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATC 82451 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 82452 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 82511 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| |||||| |||| || | ||| Sbjct 82512 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACATCGAGTGTGATCGT 82571 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 82572 CTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 82604 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||| ||| Sbjct 90879 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATC 90820 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 90819 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 90760 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| |||||| || | || | ||| Sbjct 90759 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATCGT 90700 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| ||||| || || ||||| |||||||||| Sbjct 90699 CTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGG 90665 >seq436 Length=23449 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| |||||| Sbjct 869 CACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTC 928 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || ||||||||||| ||||| || ||||||||||| Sbjct 929 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTG 988 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | |||||| |||||| |||| || | ||| || Sbjct 989 GATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTT 1048 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || || || |||||||| Sbjct 1049 GCCGGTCAGAGTCTTGACGAAGATCTGCAT 1078 >seq58 Length=197190 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| |||||| Sbjct 84953 CACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTC 85012 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || ||||||||||| ||||| || ||||||||||| Sbjct 85013 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTG 85072 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | |||||| |||||| |||| || | ||| || Sbjct 85073 GATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTT 85132 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || || || |||||||| Sbjct 85133 GCCGGTCAGAGTCTTGACGAAGATCTGCAT 85162 >seq378 Length=32279 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||| ||| Sbjct 155 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATC 96 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 95 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 36 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG 118680 ||| || || || || | |||| | ||||| Sbjct 35 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824097528864