Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq12 244 2e-59 seq113 123 5e-23 seq6 91.5 3e-13 >seq12 Length=344370 Score = 244 bits (270), Expect = 2e-59 Identities = 621/933 (67%), Gaps = 26/933 (3%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 163457 GACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTC 163398 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||||| ||| || || ||||| ||| | |||| || |||||||| || ||| Sbjct 163397 GGTGGCAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCAC 163338 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||| ||||||| || || ||||||||||||| ||| || ||| | || Sbjct 163337 AAGCATGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACG 163278 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048 || || || |||||||| ||||||||||| || | |||||| |||||||| Sbjct 163277 CACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTC 163218 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108 || || |||||| | || ||||| |||| ||||| ||||||||||| || ||| || Sbjct 163217 CTGCTCGCCATGAAGGANGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCC 163158 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 || || || | || ||||| || ||| || ||| ||||||||| |||| Sbjct 163157 TGCATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACNAAC 163098 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCCCTCCTTCGATGCTT 249227 ||||||||| || || || || || | | || |||| ||| | || || || Sbjct 163097 TCGTACATCCGTGGCACGAA-CGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTT 163039 Query 249228 TGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCAT 249284 | ||| || | | | | |||| || || || ||||| |||||||| || Sbjct 163038 CAACGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGAT 162979 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 |||| | || |||||||||||| || || |||||||| ||| | || |||||| |||| Sbjct 162978 GTATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGG 162919 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||||||||| | || ||||| || ||||||| ||||| | |||| | ||||| Sbjct 162918 CAACGAGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCAT 162859 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCT 249464 | ||||| ||||| ||||||| |||| || | | ||| ||| || |||| || Sbjct 162858 GAAGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCT 162799 Query 249465 CATCGATCTAC--ACGGCGCCGACTTCGACCAAGC-CTATA--AGAAATACGAATCCAAC 249519 | | | || || | ||| |||| | || || || | | ||||| | | Sbjct 162798 CTAC--ACNACGTGGGGTGACGAGTTCG---AGGCGCTGTACCANCAGTACGAGCGCGAG 162744 Query 249520 GGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCC 249573 ||| || ||||||| ||| || | | || || |||| | | ||||| Sbjct 162743 GGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGA---TCCTCGAGTCG 162687 Query 249574 CAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAAC 249633 ||||| ||||| || |||||| ||| ||| ||| |||| ||| |||| ||| Sbjct 162686 CAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGTAACCGCAAGTCGAAC 162627 Query 249634 CAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTC 249692 || | | | || || || ||||||||| || ||||| ||| |||||| | | ||| | Sbjct 162626 CAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGC-GAGGTGCTCGAGTACAC 162568 Query 249693 GTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| || ||| | || || |||||||| || Sbjct 162567 GTCGCCCGACGAGGTCGCGGTGTGCAACCTCGC 162535 >seq113 Length=146507 Score = 123 bits (136), Expect = 5e-23 Identities = 197/276 (71%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 254106 CTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACT 254165 |||||||||||||| || ||||| ||||| | | ||||| ||||| || |||||| Sbjct 106089 CTCGAGCTGAACGCCTCGGACGATCGCGGCATCAAGGTCGTGCGCGAGAAAGTCAAGAGC 106030 Query 254166 TTCTC-CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGAT 254224 ||| | || | || |||| | | || ||||| ||||| |||||| || | | Sbjct 106029 TTCGCGCAGGGTG-CGATCA-GCAGCTCGT--CCGGCATGCCGCCGTTCAAGATCATCGT 105974 Query 254225 CCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGA 254284 |||||||||| ||| | ||||| | |||||||||||| || || || || | |||||| Sbjct 105973 GNTGGACGAGGCCGACTCGATGACCGGCGACGCGCAGTCGGCACTGCGTCGCATGATGGA 105914 Query 254285 GACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATC 254342 | ||||| || ||||| || ||||| | || |||||||| | || | ||||| Sbjct 105913 AAACTACTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTACGTCAGCCGCA--TCATC 105856 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378 | ||| | || || || || ||||||||||| ||| Sbjct 105855 GAGCCGATCGCGTCGCGTTGTGCCAAGTTTCGGTTC 105820 >seq6 Length=416345 Score = 91.5 bits (100), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 157243 AACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 ||| |||| ||| ||||||| |||| | ||||| || ||||||||||| |||||||| Sbjct 382572 AACGCCGGCCTTCGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAG 382513 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTT 157332 || |||||||||||||| ||||| ||||| Sbjct 382512 CGAGATCATGTCCATCCAGTCGAACGGGTT 382483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073750000902656