Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq247 131 2e-25 seq12 118 2e-21 >seq6 Length=416345 Score = 141 bits (156), Expect = 1e-28 Identities = 565/867 (65%), Gaps = 56/867 (6%) Strand=Plus/Plus Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT-GTCCAAGGA 125086 |||||||| |||||| |||| ||| ||||||| |||||| |||| || || || | | Sbjct 381723 ATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCGTGCACG-A 381781 Query 125087 CCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTT 125146 ||| | || ||| | | | | || || | ||||| | ||||| |||| | | Sbjct 381782 CCTCAAGGACTGGAACAACC---TCACGGACAACGAGCGCTACTTTATCAAGCACGTGCT 381838 Query 125147 GGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT---GTTGACACGATTCTC 125203 || ||||| || | | ||||| ||||||||||| || || | ||| || ||| Sbjct 381839 CGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGNGATGA-AC--TTCAG 381895 Query 125204 TCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAA 125263 ||| || |||| |||| | ||||| ||||| ||||| || ||||||||| Sbjct 381896 CAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGAA 381955 Query 125264 CGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAA 125323 | | |||||||| ||||||| || || |||| |||||| || | | | |||| Sbjct 381956 CATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAG-ACCGTAG 382014 Query 125324 ACACATGCTCTTTAACGCAA---TCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATG 125380 | | ||| ||| | |||| ||| | || | | | | || ||||| || || Sbjct 382015 AAGAACCACCTTCTNCGCGACCATCGAGACGATCCCCTGTGTGCAGAAGAAGGCCCACTG 382074 Query 125381 GGTGATTCGGTGGATCGA--TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 || | | |||| ||| | || | | | ||| |||||| | | || || ||| Sbjct 382075 GGCGCTCAAGTGGTGCGACTTCGCGCCGCGCCG-CGTTCGCCGAGCGTATCGTCGCGTTC 382133 Query 125439 GCCGCCGTAGAGGGCATCTT-CTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGA 125496 || || || ||||||||||| ||| ||||| | ||| ||| | ||||| |||||||||| Sbjct 382134 GCTGCTGTCGAGGGCATCTTACTTCTCGGGCTCGTTCTGCT-CTATCTTCTGGCTCAAGA 382192 Query 125497 AGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCC 125556 ||||||| || ||||| || || | | |||||| | || || || |||||||| | Sbjct 382193 AGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTC 382252 Query 125557 TACACTGTGACTTTGCCATTCTACTGT--------TTCG-CAACTATCTGCGTCCCGAGT 125607 | ||||| ||||| || || |||| ||| |||| | || ||||||| Sbjct 382253 TCCACTGCGACTTCGCGTGCCTGCTGTACTCCAAGCTCGCCAACAA---GCTCCCCGAGT 382309 Query 125608 -GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | ||||| || || |||| | | |||||| || ||| || | Sbjct 382310 CTCGCATCCA-CG------AGATCAT-----TCG----CGATGCTGTCGCGATCGAGAAG 382353 Query 125667 GAGTTTCTAACCGAATCCCTACCGGT-CAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| | || || || ||||| ||| | || || ||||||| || ||||| Sbjct 382354 GAGTTCGTCCAGGACTCGCTCCCGGTGGAGC-TCATNGGTATGAACTCGTCTCTCATGTG 382412 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG--TTGATTGGCCGCAAGATT 125783 | ||||||| ||||| || ||||| || || ||| | | | | || |||||| Sbjct 382413 CCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGCGTTGC--CAAGATC 382470 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 ||||| | ||| || || || | ||| || || || || |||| ||||||||| Sbjct 382471 TACAAGGTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAAC 382530 Query 125844 TTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || ||||||||| || |||||||| Sbjct 382531 TTCTTCGAGAAGCGCGTGGGCGAGTAC 382557 >seq247 Length=71432 Score = 131 bits (144), Expect = 2e-25 Identities = 292/429 (68%), Gaps = 10/429 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| || |||||||| || ||||| ||| | |||| || ||||||| ||| Sbjct 59375 GGCGATCTCGGACCAGTGTATGGCTTCCANTGGCGCCACTTTGGTGCCAAGTACAC-GAC 59433 Query 70127 --TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACT 70183 ||| | | || || || || ||||| || || || | || || ||||| ||| Sbjct 59434 CATGCACGCC-GANTACTCNGGCCAGGGAGTCGACCAGCTNGCGGAGG-TCATTCACAAG 59491 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 |||||||| || |||| ||| | | ||| | |||| ||||||| ||||| ||| | Sbjct 59492 CTCAAGACGAACCCAAACGATCGTCGCATCATCATGTCGGCATGGAACCCTGCGGATCTC 59551 Query 70244 CACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCA 70301 | | ||||| || || ||||||||| |||| || ||||| ||| ||| | | ||| Sbjct 59552 AAGGAGATGGCGCTGCCGCCGTGTCACATGTTCTGC-CAGTTCTACGTCGC-CAACGGCG 59609 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | | || || ||||| ||| | || |||||||| ||||| || || ||||||| Sbjct 59610 AGCTNTCGTGNCAGATGTACCAGCGCTCAGCTGACATGGGACTCGGCGTGCCTTTTAACA 59669 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 |||| ||||| | ||||||| | | || || || | || || ||| || | Sbjct 59670 TTGCGAGCTACGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGTGCTGGAG 59729 Query 70422 AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGG 70481 | ||| | ||||| || ||||| || ||| | || || || || | || || | |||| Sbjct 59730 ACTTCATCCACACGATCGGCGATGCGCACATCTACTTGAACCATGTGGAACCGCTTAAGG 59789 Query 70482 TGCAACTCG 70490 | || |||| Sbjct 59790 TTCAGCTCG 59798 >seq12 Length=344370 Score = 118 bits (130), Expect = 2e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || |||||||||| |||||| | || Sbjct 161834 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGTGCTCGATATGGCCGCCGACCGCGGC 161775 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| ||| || || ||| |||| || || | |||||||| || ||| Sbjct 161774 GCCTACATTTGCCAAAGCCAGTCGCTCAACGTGCACATCGCCGAGCCGACGATCAGCAAG 161715 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 |||| || || ||||| ||||| ||||| ||||| ||||||||||| |||||||| ||| Sbjct 161714 CTGACGTCCATGCACTTCTACGCGTGGAAGAAGGGTCTCAAGACGGGTATGTACTACCTG 161655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741048158217920