Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq150 89.7 1e-12 seq575 84.2 5e-11 >seq150 Length=112013 Score = 89.7 bits (98), Expect = 1e-12 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || || || ||| Sbjct 82408 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCA 82467 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || || || || ||||||||||| ||| || Sbjct 82468 GCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 82526 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || || || || || ||||| || ||||| || || || || Sbjct 82527 CACGTTGTCGATCGAGTCCGACGGCTCGACATCGAGTGTGATCGTCTTGCCCGTCAGCGT 82586 Query 104542 TTTTACAAATATCTGCATTTTGT 104564 || ||||| |||||||| |||| Sbjct 82587 CTTCACAAAGATCTGCATCTTGT 82609 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || || || ||| Sbjct 90863 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCA 90804 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || || || || ||||||||||| ||| || Sbjct 90803 GCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 90745 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || || || || || || || || ||||| || || || || Sbjct 90744 CACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATCGTCTTGCCCGTCAGCGT 90685 Query 104542 TTTTACAAATATCTGCATTTTGTGT 104566 || ||||| |||||||| ||||| Sbjct 90684 CTTCACAAAGATCTGCATGGTGTGT 90660 >seq575 Length=11535 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || || || ||| Sbjct 1985 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCA 1926 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || || || || ||||||||||| ||| || Sbjct 1925 GCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 1867 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || || || || || || || || ||||| || || || || Sbjct 1866 CACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATCGTCTTGCCCGTCAGCGT 1807 Query 104542 TTTTACAAATATCTGCATTTTGTGT 104566 || ||||| |||||||| ||||| Sbjct 1806 CTTCACAAAGATCTGCATGGTGTGT 1782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151380815267936