Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq575 105 6e-18 seq150 105 6e-18 >seq575 Length=11535 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || || ||| | | Sbjct 2003 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCA 1944 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | ||||| || || || || || || ||| Sbjct 1943 TCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1884 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | ||| | ||| | | |||||||||| |||||| Sbjct 1883 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATC 1824 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || |||||||||||||||||| Sbjct 1823 GTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 1788 >seq150 Length=112013 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || || ||| | | Sbjct 90881 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCA 90822 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | ||||| || || || || || || ||| Sbjct 90821 TCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 90762 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | ||| | ||| | | |||||||||| |||||| Sbjct 90761 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATC 90702 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || |||||||||||||||||| Sbjct 90701 GTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 90666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || || ||| | | Sbjct 82390 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCA 82449 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | ||||| || || || || || || ||| Sbjct 82450 TCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 82509 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||| ||| | ||| | ||| | | ||||| || | ||||| Sbjct 82510 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACATCGAGTGTGATC 82569 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||||||||| Sbjct 82570 GTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 82604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284520461120