Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq65 190 3e-44 seq91 183 5e-42 seq10 183 5e-42 seq103 132 8e-27 >seq65 Length=188463 Score = 190 bits (210), Expect = 3e-44 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||||||||| || || Sbjct 176785 CGCTAAGCGTCATCGCAAGGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCTGCCAT 176726 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| |||||||||||||| ||||||||| ||||||| || |||| || |||| Sbjct 176725 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCCTGATCTACGAGGAGAC 176666 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| ||| |||| || | || || || || Sbjct 176665 CCGTGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGGGACTCGGTCACGTACACGGA 176606 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || |||||||| || || ||||||| ||||||| || | || ||||| || Sbjct 176605 GCATGCGCGCCGTAAGACCGTTACTGCCATGGACGTCGTCTACGCCCTCAAGCGTCAGGG 176546 Query 16672 CCG 16674 ||| Sbjct 176545 CCG 176543 >seq91 Length=162979 Score = 183 bits (202), Expect = 5e-42 Identities = 205/274 (75%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 159640 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 159581 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 159580 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 159521 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| ||| | | ||| || || Sbjct 159520 GCGTGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACGGA 159461 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || | || ||||| || Sbjct 159460 GCACGCGCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 159401 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 159400 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 159367 >seq10 Length=346302 Score = 183 bits (202), Expect = 5e-42 Identities = 205/274 (75%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 10906 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 10847 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 10846 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 10787 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| ||| | | ||| || || Sbjct 10786 GCGTGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACGGA 10727 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || | || ||||| || Sbjct 10726 GCACGCGCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 10667 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 10666 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 10633 Score = 174 bits (192), Expect = 2e-39 Identities = 203/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 17132 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 17073 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 17072 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 17013 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| ||| | | ||| || || Sbjct 17012 GCGAGGAGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACGGA 16953 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || | || ||||| || Sbjct 16952 GCACGCGCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 16893 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 16892 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 16859 >seq103 Length=152191 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 118162 CGCCAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGCATCACGAAGCCGGCGAT 118221 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| || ||||| |||||||| || || | |||| || |||| Sbjct 118222 CCGCCGTCTCGCTCGCCGAGGTGGTGTCAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 118281 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || || || || Sbjct 118282 GCGCGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACTCGGTCACGTACACGGA 118341 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||||||||| | |||||| ||||||| || | || || || || Sbjct 118342 GCACGCGCGCCGCAAGACTGTCACGGCGATGGATGTCGTCTACGCGCTCAAGCGACAGGG 118401 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || |||||| | ||| Sbjct 118402 ACGCACGCTCTACGGCTTTGGAGGCTAA 118429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074110146056