Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12 453 3e-122 seq247 141 2e-28 >seq12 Length=344370 Score = 453 bits (502), Expect = 3e-122 Identities = 1192/1800 (66%), Gaps = 36/1800 (2%) Strand=Plus/Minus Query 363379 GAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGG 363437 ||||| || || ||| || | |||||| | ||||| || ||||| || || ||| Sbjct 163451 GAGTACGACTACTTT-GGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGG 163393 Query 363438 TGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCC 363497 | | | ||| ||||||||||| ||| | |||| || ||| | || ||||| | Sbjct 163392 CAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCA 163333 Query 363498 GGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTC-GTGTATTCACGCAC 363555 || | || |||||| | || || || || | | || || | | ||||||||| Sbjct 163332 TGACATCGACGCCGCGCTCGAGACGTACGAG--TACATGTCGCAAAGCTTCTTCACGCAC 163275 Query 363556 GCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT 363615 || ||||| || ||| ||| || || || | || ||| |||| || ||||| || Sbjct 163274 GCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTG 163215 Query 363616 CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTT 363675 || |||||||| || || |||||||| |||| |||||| || ||| | || || Sbjct 163214 CTCGCCATGAAGGANGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCTGC 163155 Query 363676 ATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAG 363734 || |||||| || ||||| |||||||| | || | ||||| | || || ||| Sbjct 163154 ATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCG-TGCACAACATCCGCGCGACNAACTC 163096 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||| || ||||| || | ||||| || || || |||||||| || ||||| | Sbjct 163095 GTACATCCGTGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAA 163036 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || ||| | || || || |||||||| || |||||||| || |||| || ||||| Sbjct 163035 CGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTA 162976 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 ||||||||| || ||||| || || ||||| || || ||| ||| ||| || || Sbjct 162975 TCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAA 162916 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| || || |||||||||||||| || | ||| || | || | || ||||| Sbjct 162915 CGAGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCATGAA 162856 Query 363975 GCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 |||||| ||||| || || ||| || || ||||| |||| || ||||| Sbjct 162855 GCGCGTTGAGGCCAACGGCGAG---TGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCT 162799 Query 364032 TTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAA 364091 | | ||||||||||| | | || || ||| | |||| || ||||| Sbjct 162798 CTACACNACGTGGGGTGACGAGTTCGAGGCGCTGTACCANCAGTACGAGCGCGAGGGCCG 162739 Query 364092 GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 || || ||||| || | ||| ||| |||| ||||| || ||| | || |||||||| || Sbjct 162738 CGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGA 162679 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCA 364211 ||| || || || || ||| ||||||| || ||||| ||||||||||| ||||||||| | Sbjct 162678 GACGGGCACGCCGTACATGCTGTACAAGGACTCGTGTAACCGCAAGTCGAACCAGCAGAA 162619 Query 364212 CCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 ||| || || || | ||||||||| || |||| | | || ||||| | ||||| Sbjct 162618 CCTCGGCACGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACACGTCGCCCGA 162559 Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATG---G 364328 |||| || || || ||||| ||||| |||||||| | |||||| || || | Sbjct 162558 CGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAACGACGACAA 162499 Query 364329 TACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAA 364388 || || ||| | || | || || ||| | ||| | | || |||| ||| |||| Sbjct 162498 GACCTTCGACTTCAAGAAGCTGTACGACATCACCAAGGTCGTCACGCGCAACCTCAACAA 162439 Query 364389 GGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCG 364448 ||| ||||| | || || || || || || || |||||||| || |||| || || Sbjct 162438 GGTCATCGANATCAACTACTACCCGATCCCCGAGGCCGAGCGAAGCAACCTGCGCCACCG 162379 Query 364449 CCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG---ATGGC 364505 |||||| || | || || ||||| ||||| |||| | | || |||| | || Sbjct 162378 CCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGT---TCATCCTCATGGGCTACGC 162322 Query 364506 ATTTGA-TTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTG 364564 ||||| || | || || || | || || ||| | ||||| || || |||| || | Sbjct 162321 GTTTGAGAGCGAC-GAGGCNCGCGAGCTCAACAAGAACATCTTCGAGACGCTGTACTTCG 162263 Query 364565 CCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGG 364624 ||| ||| || ||| || | || || | || |||| | | || |||| Sbjct 162262 GCGCGATGGAGGCCTCGATGGAGCTCGCGAAGGAGCACGGCCCGTACGCCAGCTACGAGG 162203 Query 364625 GGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC---CATCT 364680 | || || | | || |||| | ||||||| || | ||| ||||||| | || Sbjct 162202 GCTCACC-CGTGAGCAAGGGCATCTTCCAGTACGACATGTGGGGCGTCACGCCGACGTCC 162144 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 | || ||| |||||| |||| ||| ||| | || | || |||||||| Sbjct 162143 GGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTCGCGCAGTACGGCGTGCGCAACTCG 162084 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 || | ||||| ||||| ||||| || || || ||||||||||| |||||||||| Sbjct 162083 CTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTCGGCAACAACGAGTCG 162024 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 |||| ||||| || | ||| | || ||||| || ||| | || || || || | Sbjct 162023 ATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCAGGCGAGTTCACGATC 161964 Query 364861 GTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG 364920 || || |||||||| | ||||| || ||| | ||| | ||| | || Sbjct 161963 GTGAACAAGTACCTNATGAAGGAGCTCATCGAGCTCGGCATCTGGACGCCCGAGGTGCGT 161904 Query 364921 AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTG 364980 ||| | ||| | || | || || ||||||||| | | | | || || | || Sbjct 161903 AACCAGATCCTGCACGACCACGGCTCAGTGCAGAACGTGCGCGTGATCCCGGATGCCGTG 161844 Query 364981 AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCTCATTGATATGGCG 365037 ||| | ||||| || || ||||| || || || ||| | | | |||||||| Sbjct 161843 AAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGGCCGTGCTCGATATGGCC 161787 Query 365038 GCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCA 365097 ||||| ||||| || | || || || ||||||||| | ||||| ||| | |||| Sbjct 161786 GCCGACCGCGGCGCCTACATTTGCCAAAGCCAGTCGCTCAACGTGCACATCGCCGAGCCG 161727 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 || | |||||| || |||||||| ||||||| |||||| ||||| ||||| ||| Sbjct 161726 ACGATCAGCAAGCTGACGTCCATGCACTTCTACGCGTGGAAGAAGGGTCTCAAGACGGGT 161667 >seq247 Length=71432 Score = 141 bits (156), Expect = 2e-28 Identities = 303/451 (67%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACG-- 111483 ||||||||||| |||||||| || | || || | ||||| | | || || Sbjct 59312 ATTTGGGATGGNAATGGATCCAAGGAATACCTGGANAGCATCGGTCTCG--GNCATCGTG 59369 Query 111484 AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACA 111543 ||| || |||||||||||||| || || || || ||||||||||||||||| | |||| Sbjct 59370 AAGCTGGCGATCTCGGACCAGTGTATGGCTTCCANTGGCGCCACTTTGGTGCCAAGTACA 59429 Query 111544 AAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 |||||||||| | || |||||| || || | | | |||||| | Sbjct 59430 CGACCATGCACGCCGANTACTCNGGCCAGGGAGTCGACCAGCTNGCGGAGGTCATTCACA 59489 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGC-- 111661 | | |||| ||||||| ||||||||| || ||| ||||||||||| ||| Sbjct 59490 AGCTCAAGACGAACCCAAACGATCGTCGCATCATCATGTCGGCATGGAACCC---TGCGG 59546 Query 111662 AT-TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACG 111720 || | | | ||||| || || || ||||| | | |||||||| || || | ||| Sbjct 59547 ATCTCAAGGAGATGGCGCTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTCGCCAACG 59606 Query 111721 GGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTA 111780 | ||| || || || ||||| ||||| || ||||| || || || || || || |||| Sbjct 59607 GCGAGCTNTCGTGNCAGATGTACCAGCGCTCAGCTGACATGGGACTCGGCGTGCCTTTTA 59666 Query 111781 ATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGG 111840 | ||||| || ||||| || | ||| | | ||||| || | ||| || | | Sbjct 59667 ACATTGCGAGCTACGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGTGCTG 59726 Query 111841 GTGAATTCATTCACGTTATCGGAGATGCGCA 111871 | || ||||| ||| ||||| |||||||| Sbjct 59727 GAGACTTCATCCACACGATCGGCGATGCGCA 59757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303333694532144