Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq12 286 3e-72 seq436 134 1e-26 seq58 134 1e-26 seq575 125 7e-24 seq150 125 7e-24 seq378 118 1e-21 seq43 96.9 3e-15 >seq12 Length=344370 Score = 286 bits (316), Expect = 3e-72 Identities = 1142/1766 (65%), Gaps = 59/1766 (3%) Strand=Plus/Plus Query 144750 TGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGACG 144809 |||||| |||||||| ||||| ||||| ||| ||| | |||| ||| || |||| Sbjct 161651 TGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACG 161710 Query 144810 TCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGA 144869 ||| | | ||| ||||| || | || || ||||| |||||||| |||| Sbjct 161711 TCAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTGAGCGACTGGCTTTGGCAAATGT 161770 Query 144870 AAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCGGT 144927 | ||| ||||||||||||||| || | || | | ||| || || ||||| | || Sbjct 161771 AGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGC--TTGATCTCCCACACCGT 161828 Query 144928 CTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGT- 144986 ||||||| || | | ||||| || || | ||| | || || | || Sbjct 161829 CTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTC 161888 Query 144987 GCGCAA-ATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCA 145045 | ||| || ||| || |||| |||| ||| | | | || ||| | || | Sbjct 161889 GTGCAGGATCTGG--TTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTC 161946 Query 145046 ATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTA 145105 || | ||||| || |||| | |||||||| || | ||| || || |||| ||| Sbjct 161947 ATNAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTG 162006 Query 145106 GACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGC 145165 | |||||| || || | |||||||| ||||| ||||| || ||||||| || || ||| Sbjct 162007 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGC 162066 Query 145166 ATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA 145225 || ||| | || | || ||||||| ||||| || | || | |||| |||| Sbjct 162067 ATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCG 162126 Query 145226 CCCCAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCC 145282 |||| ||||| || || |||||| | ||| |||||||||||||||| || |||||| Sbjct 162127 GCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCC 162186 Query 145283 TCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAA 145342 | ||| |||| ||| | || ||| ||| || |||||||| || Sbjct 162187 TTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CAT 162245 Query 145343 C-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC 145401 | ||||||| |||||||| || | |||||| || | | |||||||| || Sbjct 162246 CGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGNGC 162305 Query 145402 TTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCC 145461 || |||||||| ||| || || || | || || || ||||| ||||| | || Sbjct 162306 CTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCC 162365 Query 145462 CACGCCGATGGGCCGATGTTTCATGTTGCTCATC-CTCGCCGACTC---GATAGGATATC 145517 | |||||| || || || || |||||| || |||| | ||| ||| || || Sbjct 162366 GATGCCGATCGGGCGGTGGCGCAGGTTGCT--TCGCTCG--GCCTCGGGGATCGGGTAGT 162421 Query 145518 GATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACT 145577 || ||||| | || || | ||| ||| || ||||| || |||| || || Sbjct 162422 AGTTGATNTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCT 162481 Query 145578 TTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGAC--GGCGATCGACGC 145635 | | ||||| || | || ||| || |||| | || | ||| ||||| ||||| Sbjct 162482 TCTTGAAGTCGAA---GGTCTTGTCGTCGTTCACA-AACT-TGGACAGCGCGATGGACGC 162536 Query 145636 CAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAAT 145694 | || || || || ||| || |||| || |||| | | | |||| ||| | | Sbjct 162537 GAGGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTCGCAGCAGAGGT 162595 Query 145695 TGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGT 145754 |||| | ||| || || || || ||||| || || | ||| |||| |||||||| Sbjct 162596 TGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGT 162655 Query 145755 AGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGT 145811 | ||||||||||| ||| ||||| | ||||| ||| | ||| || | | || | Sbjct 162656 ACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGC---T 162712 Query 145812 CCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCT 145871 |||||| || | | || | ||||||||| ||||| | ||| ||| ||| Sbjct 162713 GCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGNTGGTACAGCGCCT 162772 Query 145872 CAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACC 145931 | ||| || ||| | | | || || || || ||| || || | ||| || Sbjct 162773 CGAACTCGTCACCCCACGTNGTGTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCC 162832 Query 145932 ATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCA 145991 | |||||||||| | ||||||| ||| || | ||| || | ||||| |||||| | || Sbjct 162833 ACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACA 162892 Query 145992 AGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC-GCTTCAAATTAAGCACACT-A 146047 | || |||| |||| ||| | || || ||| ||| | | || | ||| Sbjct 162893 GATCACGAGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTCTTGAGGTCGAGGA-ACTCG 162948 Query 146048 TAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCA 146104 ||||||| ||||||||||| || | ||| | |||| | || || || || |||| Sbjct 162949 AAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCA 163008 Query 146105 CCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTG 146164 ||||| ||||| | ||| || ||| ||| || ||||||| ||||||| ||| |||| | Sbjct 163009 CCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTC 163068 Query 146165 GCTACGCCGTTCGT--AGAGTTTATTCTGGT--GCCGCGGGAGCGCACGCAATGAACATT 146220 | ||||||||| | | | | || | ||| ||| | | || || | Sbjct 163069 GACGAGCCGTTCGTGCCACGGATGTACGAGTTNGTCGC----GCGGATGTTGTGCACGCT 163124 Query 146221 CACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGAT 146280 || || | |||||| | ||||||| || |||||| | |||||| || ||||| Sbjct 163125 GACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGAT 163184 Query 146281 GCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATC 146338 ||| || || || |||| ||| ||||||| |||||||| ||| ||||| | Sbjct 163185 GCCCTCGATCGAGTCNTCCTTC--ATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGC 163242 Query 146339 GGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATC 146398 ||||| || || ||||| |||||| |||||||||| || | || | ||| | Sbjct 163243 GGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTAC 163302 Query 146399 CGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATG 146458 ||||| |||| ||| | | ||||| | || ||||| | ||||||||||| Sbjct 163303 TCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGA 163362 Query 146459 AGCATGTGTTGGGGCCGCTCCGCCAC 146484 | ||| || || || ||||| || || Sbjct 163363 ATCATCTGCTGCGGGCGCTCAGCGAC 163388 >seq436 Length=23449 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| || Sbjct 852 CCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 911 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct 912 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 971 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| |||||||||| | || | | || | | ||||| | Sbjct 972 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACG 1031 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| ||||| || ||||| |||||||| Sbjct 1032 TCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 1078 >seq58 Length=197190 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| || Sbjct 84936 CCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 84995 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct 84996 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 85055 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| |||||||||| | || | | || | | ||||| | Sbjct 85056 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACG 85115 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| ||||| || ||||| |||||||| Sbjct 85116 TCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 85162 >seq575 Length=11535 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | ||||||||||| || |||||||| || Sbjct 2016 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 1957 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 1956 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 1897 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || |||||||| | | || | | || | | ||||| Sbjct 1896 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGAC 1837 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || || || || || || || || ||||||||| Sbjct 1836 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 1788 >seq150 Length=112013 Score = 125 bits (138), Expect = 7e-24 Identities = 179/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | ||||||||||| || |||||||| || Sbjct 82377 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 82436 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 82437 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 82496 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || |||||||| | | || | | || | | ||||| Sbjct 82497 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGAC 82556 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTAT 131246 |||| || | || || || || || || || || || |||||||| ||| || | | Sbjct 82557 ATCGAGTGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT--CTTGTTGTGT 82614 Query 131247 TCCTTCCTCTT 131257 | || ||||| Sbjct 82615 TGGTTGCTCTT 82625 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | ||||||||||| || |||||||| || Sbjct 90894 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 90835 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 90834 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 90775 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || |||||||| | | || | | || | | ||||| Sbjct 90774 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGAC 90715 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || || || || || || || || ||||||||| Sbjct 90714 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 90666 >seq378 Length=32279 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | ||||||||||| || |||||||| || Sbjct 170 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 111 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 110 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 51 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| || || ||||| || |||||||| Sbjct 50 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 21 >seq43 Length=242114 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| || Sbjct 82739 CCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 82798 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct 82799 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 82858 Query 131128 ATTCCT 131133 |||||| Sbjct 82859 ATTCCT 82864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005767009280