Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq172 100 3e-16 seq4 100 3e-16 seq1 98.7 1e-15 seq480 89.7 6e-13 seq83 84.2 3e-11 >seq172 Length=101696 Score = 100 bits (110), Expect = 3e-16 Identities = 177/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || ||||| || ||||| | |||||||| ||| Sbjct 95232 ATCTTCATCGGTCCGACGTTCTACCAGCGTCTCAAGCATATGGTCGACGACAAGATCCAC 95173 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| ||| | ||||||| ||| |||||||| | ||||| ||| | Sbjct 95172 TCGCGCTCGCGCGGCCCCGTGACGATGCTGACGCGCCAGCCTATGGAGGGTCGTGCGCGA 95113 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | ||||| || || | ||||||||||| ||||| |||| | ||||||| | Sbjct 95112 GAAGGTGGTCTGCGTATGGGAGAGATGGAGCGTGACTG---TCTGATCTCGCACGGCTCG 95056 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| | | |||||||| Sbjct 95055 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTATCGCGTGCACGTGTGC 94996 Query 15635 AAAGACTGCGGCATGAT 15651 | ||||||||| || Sbjct 94995 GACATCTGCGGCATCAT 94979 >seq4 Length=466381 Score = 100 bits (110), Expect = 3e-16 Identities = 177/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || ||||| || ||||| | |||||||| ||| Sbjct 10056 ATCTTCATCGGTCCGACGTTCTACCAGCGTCTCAAGCATATGGTCGACGACAAGATCCAC 9997 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| ||| | ||||||| ||| |||||||| | ||||| ||| | Sbjct 9996 TCGCGCTCGCGCGGCCCCGTGACGATGCTGACGCGCCAGCCNATGGAGGGTCGTGCGCGA 9937 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | ||||| || || | ||||||||||| ||||| |||| | ||||||| | Sbjct 9936 GAAGGTGGTCTGCGTATGGGAGAGATGGAGCGCGACTG---TCTGATCTCGCACGGCTCG 9880 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| | | |||||||| Sbjct 9879 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTATCGCGTGCACGTGTGC 9820 Query 15635 AAAGACTGCGGCATGAT 15651 | ||||||||| || Sbjct 9819 GACATCTGCGGCATCAT 9803 >seq1 Length=655053 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGA 126240 ||| | || ||||| ||| || | |||||||| |||| || |||||||||||||| Sbjct 287141 GTGAAGATATAGCGCGGACTNGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGT 287082 Query 126241 CCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACA 126300 || ||| | || ||| ||| ||||| || || ||| |||||||||| | |||||| Sbjct 287081 CCCGACGGATACAGCAANGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACA 287022 Query 126301 ATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCAC-GTAGCC 126359 || ||| | ||| | ||||||||| | ||| | || ||||| || || ||| || Sbjct 287021 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACC 286963 Query 126360 GCTCAGCTGCGCAACCTTGA 126379 |||||||| ||||||| Sbjct 286962 AGCGAGCTGCGCGACCTTGA 286943 >seq480 Length=19529 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 126187 ATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCC 126246 ||||| || || | ||| | ||| || || ||| | | || || ||||||||||||| Sbjct 3162 ATGTAACGAGGCGATGCTGCATCTTTACCACCCGCTAGTCGAGTACCAAACTGACCGTTT 3103 Query 126247 GGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTC 126306 || ||||| || | |||||| ||||||||| || || || | |||| ||| || Sbjct 3102 GGAGACAACAGATGGATGTTGTTGCTTCCCACAAAATCTTGGGCCATGTTGATAATCGTG 3043 Query 126307 TCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGC 126366 || || |||| || ||||| | ||| | | ||||||| |||||| || | ||| Sbjct 3042 CCGTTGAGACTCTGTTCACCGTGGTGGTACGCAGAATGCTCGGACACGTATCCACCAAGC 2983 Query 126367 TGCGCAACCTTGAT 126380 || |||||||| || Sbjct 2982 TGAGCAACCTTAAT 2969 >seq83 Length=171706 Score = 84.2 bits (92), Expect = 3e-11 Identities = 196/291 (67%), Gaps = 12/291 (4%) Strand=Plus/Plus Query 15365 TCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTATCAC 15424 |||||| | || |||||| ||||| || ||| |||||||| |||| ||||| || Sbjct 125577 TCGGGCATCACGGGCGAACCGATCCTGTGCTACATCTTTATGGGCCCGATCTACTACCAG 125636 Query 15425 CGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAGGTGACGACG 15484 ||||| |||||||| | ||||||||||||||| || | | || | | | | Sbjct 125637 AAGCTCAAGCACATGGTCATGGACAAGATGCACGCNCGNGCTCGAGGCCCGCGCGCNGTG 125696 Query 15485 CTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAGATG 15544 ||| || ||||| | | || || |||| | ||| ||||| || | || |||||| Sbjct 125697 CTCACGCGNCAGCCGACCGAGGGCCGCTCGCGCGACGGCGGCCTGCGTCTCGGCGAGATG 125756 Query 15545 GAAAAGGACTGCATTCTGGT--GC-ACGGCGCCACCCAATTCCTCAACGAGCG---CATG 15598 || ||||| |||| | || ||||||| | | | |||| ||||| |||| Sbjct 125757 GAGCGCGACTG---TCTGATCGGCTACGGCGCGAGCATGCTGCTCATGGAGCGTCTCATG 125813 Query 15599 TTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGCAAAGACTGCGGCATG 15649 |||| |||||| ||||| | ||||||||| | | |||| ||||| Sbjct 125814 -ATCTC--GAGTGACGCGTTCACGGCCGACGTGTGCCAGGGCTGCCGCATG 125861 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 15020 GTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCT-GG 15078 || ||||| |||| |||||| ||| ||||||||| ||||||||||| || | | Sbjct 125232 GTCAAGGTGCTCATCCGCCAGACGCGTCGGCCCGAGATCGGCGACAAGTTCAGCAGTCGC 125291 Query 15079 TATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCG- 15137 | ||| || |||||| |||||||| ||| | |||||| |||||||| || | || Sbjct 125292 CACGGC-CAGAAGGGCGTGTGCGGCACGATCCGCAACCAGGAGGACATGCCGTTCAACGA 125350 Query 15138 CGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGAC 15195 || | ||| || || ||| | ||||| ||||| || | ||||| ||||||||| Sbjct 125351 CGAC-GGCGTGTGCCCGGACCTGATCATGAACCCGCACGGTTTCCCGAGCCGCATGAC 125407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611382890259200