Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq436 123 2e-23 seq58 123 2e-23 seq575 95.1 1e-14 seq150 95.1 1e-14 >seq436 Length=23449 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || || || || ||| | ||||| || ||| |||| || || || || Sbjct 1084 GTAAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAG 1025 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || | | | ||| || |||| || || || || ||||||||||| || || || Sbjct 1024 CCTTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCG 965 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || || || || || |||||||| ||| | |||||| |||||| |||| || Sbjct 964 GATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGAC 905 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || || || || || Sbjct 904 TACAACATCCAGAAGGAGTCGAC 882 >seq58 Length=197190 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || || || || ||| | ||||| || ||| |||| || || || || Sbjct 85168 GTAAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAG 85109 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || | | | ||| || |||| || || || || ||||||||||| || || || Sbjct 85108 CCTTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCG 85049 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || || || || || |||||||| ||| | |||||| |||||| |||| || Sbjct 85048 GATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGAC 84989 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || || || || || Sbjct 84988 TACAACATCCAGAAGGAGTCGAC 84966 >seq575 Length=11535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| ||||| || || | | Sbjct 1789 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCGTCG 1848 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| || || || || || Sbjct 1849 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 1908 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | || || |||||| Sbjct 1909 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAAC 1968 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 1969 ATCCAGAAGGAGTCGAC 1985 >seq150 Length=112013 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | || || || ||| |||| || || || || | Sbjct 82607 AAGATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACACTCGATGTCGAGCCG 82548 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || || ||||| ||||||||||| || || || || Sbjct 82547 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGAC 82488 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || ||||| ||| | |||||| |||||| | || || ||| Sbjct 82487 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTAC 82428 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 82427 AACATCCAGAAGGAGTCGAC 82408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| ||||| || || | | Sbjct 90667 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCGTCG 90726 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| || || || || || Sbjct 90727 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 90786 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | || || |||||| Sbjct 90787 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAAC 90846 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 90847 ATCCAGAAGGAGTCGAC 90863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721902401480