Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq350 185 2e-41 seq6 132 1e-25 seq480 131 3e-25 >seq350 Length=38155 Score = 185 bits (204), Expect = 2e-41 Identities = 450/673 (67%), Gaps = 18/673 (3%) Strand=Plus/Minus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || || |||||||||||||||||||| | | | || ||||| | Sbjct 13042 TGCCTGTCGGTGCCCTCTCTGGTGGTTGGAAGATGAAGCTCGAGTTGGCCCGTGCCATGC 12983 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| | || || ||||||||||| || |||||| |||| ||||| Sbjct 12982 TCATGAAGGCTGATATTCTCCTTCTTGATGAGCCGACGAACCACTTGGATGTGCACAACG 12923 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || ||||| || || | Sbjct 12922 TCAAGTGGCTCGAGGACTACCTCACGAGCCTCACGAACGTGACGTCGCTCATCGTGTCGC 12863 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||| ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 12862 ACGACTCTGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGTA 12806 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 ||||| | | ||| || ||||| || | ||||| ||| || || ||||| Sbjct 12805 AGCTCAAGACGTACAAGGGTAACCTCTCCGAGTTCGT--CAAGCAGAAGCCGGAGGCCAA 12748 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| ||| || ||||| ||||||||||| || || || Sbjct 12747 GACGTACTACGAGCTTGAGGCCGCTGCCTTCAAGTTCACGTTCCCTGAGCCGGGTTTCCT 12688 Query 280049 GGAGGGCATCAC-ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | |||| | ||| || || | ||||| ||| | ||| | | Sbjct 12687 TGCTGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCTCACGAACTGCTCGTACCAGT 12629 Query 280108 ATCCCAATGGCCCCAACAT--CTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACT 280161 | || ||||| | ||| | || | | ||| ||||| | | ||| || || Sbjct 12628 ACCC---TGGCCGCGACAAGCCGTCGATCCGTGACATCAACGTGACGTGTTCGCTGGCCT 12572 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || |||| || || || || || ||||| |||||||| || || ||||| | |||| Sbjct 12571 CGCGTATTGCCGTTATCGGCCCGAACGGTGCCGGTAAGTCGACGCTCATCAAGATGCTGA 12512 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| | || | || | || | || |||||||| || |||||| | || | Sbjct 12511 CGGGTGAGGTCGAGCCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCT 12452 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 |||| || |||||||||||||||||||| ||| | ||||| ||||| || | ||||| | Sbjct 12451 ACGTTGCCCAGCACGCTTTCCACCACATTGAGGAGCACCTCGACATTACGGCCAACCAGT 12392 Query 280342 ACATTCAGTGGCG 280354 |||| |||||||| Sbjct 12391 ACATCCAGTGGCG 12379 Score = 185 bits (204), Expect = 2e-41 Identities = 450/673 (67%), Gaps = 18/673 (3%) Strand=Plus/Minus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || || |||||||||||||||||||| | | | || ||||| | Sbjct 20018 TGCCTGTCGGTGCCCTCTCTGGTGGTTGGAAGATGAAGCTCGAGTTGGCCCGTGCCATGC 19959 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| | || || ||||||||||| || |||||| |||| ||||| Sbjct 19958 TCATGAAGGCTGATATTCTCCTTCTTGATGAGCCGACGAACCACTTGGATGTGCACAACG 19899 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || ||||| || || | Sbjct 19898 TCAAGTGGCTCGAGGACTACCTCACGAGCCTCACGAACGTGACGTCGCTCATCGTGTCGC 19839 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||| ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 19838 ACGACTCTGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGTA 19782 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 ||||| | | ||| || ||||| || | ||||| ||| || || ||||| Sbjct 19781 AGCTCAAGACGTACAAGGGTAACCTCTCCGAGTTCGT--CAAGCAGAAGCCGGAGGCCAA 19724 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| ||| || ||||| ||||||||||| || || || Sbjct 19723 GACGTACTACGAGCTTGAGGCCGCTGCCTTCAAGTTCACGTTCCCTGAGCCGGGTTTCCT 19664 Query 280049 GGAGGGCATCAC-ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | |||| | ||| || || | ||||| ||| | ||| | | Sbjct 19663 TGCTGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCTCACGAACTGCTCGTACCAGT 19605 Query 280108 ATCCCAATGGCCCCAACAT--CTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACT 280161 | || ||||| | ||| | || | | ||| ||||| | | ||| || || Sbjct 19604 ACCC---TGGCCGCGACAAGCCGTCGATCCGTGACATCAACGTGACGTGTTCGCTGGCCT 19548 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || |||| || || || || || ||||| |||||||| || || ||||| | |||| Sbjct 19547 CGCGTATTGCCGTTATCGGCCCGAACGGTGCCGGTAAGTCGACGCTCATCAAGATGCTGA 19488 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| | || | || | || | || |||||||| || |||||| | || | Sbjct 19487 CGGGTGAGGTCGAGCCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCT 19428 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 |||| || |||||||||||||||||||| ||| | ||||| ||||| || | ||||| | Sbjct 19427 ACGTTGCCCAGCACGCTTTCCACCACATTGAGGAGCACCTCGACATTACGGCCAACCAGT 19368 Query 280342 ACATTCAGTGGCG 280354 |||| |||||||| Sbjct 19367 ACATCCAGTGGCG 19355 Score = 114 bits (126), Expect = 3e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| || ||||| | ||||||||| ||| | Sbjct 20356 GGATCTCTGCAACTGCGAGTTCTCGCTCGCGTACGGTGGTATGATTCTGCTGAACAACGC 20297 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| ||| | ||||||||||| |||| || |||||| ||| || || || ||||| Sbjct 20296 CCGTCTCCGCCTCAAGCGTGGCCACCGCTACGGTCTCTGCGGCCCGAACGGTTGCGGTAA 20237 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTG 279528 | || || ||||||||||| | ||||| ||||| | ||| ||||| || || || Sbjct 20236 GTCGACGCTTATGCGCGCCATCTCGAACGGCCAGCTCG-AGGGTTTCCCGACCCAGGATG 20178 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 || | | ||| || | || |||||| || || Sbjct 20177 AGCTCAAGACGGTCTTCGTCGAGCACAACCTC 20146 >seq6 Length=416345 Score = 132 bits (146), Expect = 1e-25 Identities = 539/834 (65%), Gaps = 40/834 (5%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| ||||||| ||||| | Sbjct 382538 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCGAACGGGTTCGAC 382479 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | |||||| || || || ||| || || ||||| | Sbjct 382478 ACCTTGTAGATCTTGGCAACGCCAAGCGCGTGGAGGAGGCGATCGGCGCAGAACTCAATG 382419 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || |||||||| || || | | || ||| | || || Sbjct 382418 TACTGGCACATGAGAGACGAGTTCATACCNATGAGCTCCACCGGGAGC-GAGTCCTGGAC 382360 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG--TGCCAGAGAC 251799 ||| ||||| ||| | || || || || | | || || | || ||| ||| | Sbjct 382359 GAACTCCTTCTCGATCGCGACAGCATCG----CGAATGA--TCTCGTGGATGCGAGACTC 382306 Query 251800 ----AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACC 251852 |||||||| | ||||| |||||||| || | ||| || || | ||| ||||| Sbjct 382305 GGGGAGCTTGTTGGCGAGCTTGGAGTACAGCAGGCACGCGAA---GTCGCAGTGGAGACC 382249 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||| || ||||| |||||| || | | ||||||||||| | || || ||| | Sbjct 382248 CTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCCGCGCTTCTT 382189 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAA-CAGCAGACCCTCGACACACACCCATG 251971 |||||||||||| | ||| || || || ||||| | | ||||||||| | | | Sbjct 382188 GAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGTAAGATGCCCTCGACAGCAGCGAACG 382129 Query 251972 CAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAG------AACTTCTGTGCCCATG 252025 | || | ||||| || |||| | | ||| ||| |||| | ||||| Sbjct 382128 CGACGATACGCTCGGCGAACG--CGGCGCGGCGCGAAGTCGCACCACTTGAGCGCCCAGT 382071 Query 252026 CTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAG-AGAGAGTTCCGCT-C 252083 |||||||| || |||||| || ||||| | | || || |||| || | Sbjct 382070 GGGCCTTCTTCTGCACACAGGGGATCGTCTCGATGGTCGCGNAGAAGGTGGTTCTTCTAC 382011 Query 252084 GGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTC 252143 || | ||||| |||| || || | || || ||||||| |||||| |||||| || Sbjct 382010 GGTCTGGTCCTTGATGTACGTGTCGATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTC 381951 Query 252144 GTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAA 252203 | |||||| | | ||||| |||||| ||| | || || || || Sbjct 381950 AATCGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTGAA 381891 Query 252204 GTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGT 252263 ||| | | | |||||| | || |||||||| ||| | || ||||| | || | | Sbjct 381890 GTTCATCNCGAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAAGAACGCGAGCACGTG 381831 Query 252264 CTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATT 252323 |||||| |||| ||||| | ||| |||| |||| |||||| | ||| || Sbjct 381830 CTTGATAAAGTAGCGCTCGTTGTCCGTGAGGTTGT---TCCAGTCCTTGAGGTCGTG--- 381777 Query 252324 CA-GAGG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || |||| | ||||| |||||||||| | | | | |||||||||||||| Sbjct 381776 CACGAGGTCGATCTCTTCAGCCGTCCAGAAGCTCGCCTCAGCCTTCTTGTACAT 381723 >seq480 Length=19529 Score = 131 bits (144), Expect = 3e-25 Identities = 245/359 (68%), Gaps = 1/359 (0%) Strand=Plus/Plus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 ||||||||||| |||||| || ||| || || ||||| ||||| ||||| |||||| Sbjct 2966 GAAATTAAGGTTGCTCAGCTTGGTGGATACGTGTCCGAGCATTCTGCGTACCACCACGGT 3025 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 || |||||||| | || | ||| | |||||| || || | |||||| || |||||| Sbjct 3026 GAACAGAGTCTCAACGGCACGATTATCAACATGGCCCAAGATTTTGTGGGAAGCAACAAC 3085 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 || | || || || ||||||||||||||| |||| ||| |||||| || ||| Sbjct 3086 ATCCATCTGTTGTCTCCAAACGGTCAGTTTGGTACTCGACTAGCGGGTGGTAAAGATGCA 3145 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAG 218889 || || | | || |||||||| || | || | || || | | ||| | | Sbjct 3146 GCATCGCCTCGTTACATCTTTACGAACCTCGAGCAACTCACACGACGCATCTTCGACCCT 3205 Query 218890 GCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGG 218949 ||| | | | | | ||||| || || ||||| ||||||||||| || ||| Sbjct 3206 CTGGATAACGACAACTTGACATATCTCGACGATGATGGACAGTCGATTGAGCCTGAATGG 3265 Query 218950 TATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 ||||| || ||||| | ||||| ||||||| | | |||||||| || ||||| Sbjct 3266 TATGTTCCGATCATTCCAATGGCACTCGTCAATGGTGGCGAGGGTATCGGCAC-GGGTT 3323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027821102362472