Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12 509 3e-139 seq6 324 3e-83 >seq12 Length=344370 Score = 509 bits (564), Expect = 3e-139 Identities = 1369/2064 (66%), Gaps = 75/2064 (4%) Strand=Plus/Plus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 |||||||||||| || |||||||| || | ||| |||| || |||||||| |||||| Sbjct 161655 CAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAG 161714 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| | ||| | | || |||| |||||| |||||||| || Sbjct 161715 CTTGCTGATCGTCGGCTCGGCGATGT----GCAC--------GTTGAGCGACTGGCTTTG 161762 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | | | ||| |||| || || |||||||| || | | ||||||| ||||| Sbjct 161763 GCAAATGTAGG-CGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCC 161821 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGC 244013 || |||||||||| | ||| | | || |||| | | | ||||||||| |||| Sbjct 161822 ACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGC 161881 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA--- 244070 | | || | | || |||| | |||| | |||| | ||| | |||| | Sbjct 161882 CGTGGTCGTGCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCGA---GCTCGATGA 161938 Query 244071 GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 || ||| | |||| | ||||||| | | ||||| || | ||||||||||| | || Sbjct 161939 GCTCCTTCATNAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGT 161998 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 | | |||| | ||| ||||||||| ||| ||||||| || |||||||| || || Sbjct 161999 ACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACG 162058 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC 244250 | |||||||| |||| | |||||| ||| | |||||||| | | || || | Sbjct 162059 CCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCT 162118 Query 244251 TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||||| || ||||||||| | ||| || ||| || ||| |||||||||||| Sbjct 162119 TGAGCGCGGCCCAGTCCCAGAGGCCGGAC--GTCGGCG----TGACGCCCCACATGTCGT 162172 Query 244311 ACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT 244370 |||| | | |||||||| ||||| |||||||||| | | ||| || |||| || Sbjct 162173 ACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCT 162232 Query 244371 GGGCCAGCTTACAGCTCT-CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG 244429 || |||| || | | || | ||| || |||| | ||||||||||| ||||| Sbjct 162233 TCGCGAGCTC-CATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTG 162291 Query 244430 TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCC 244489 || | ||||| |||| | ||| || | | |||||| | ||||| |||| || Sbjct 162292 TTGAGCTCGCGNGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCG 162351 Query 244490 AGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGC 244549 || |||||||||||||||||||| || | ||| ||| |||| ||| ||| ||||| Sbjct 162352 AGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCGGCCTCGGGG 162411 Query 244550 ACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACG 244609 | ||||| ||||| ||||| ||||||||||||||||| |||| | | || | Sbjct 162412 ATCGGGTAGTAGTTGATNTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATG 162471 Query 244610 TCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAAC 244669 ||| |||| || |||||| | || || | || | || |||||||| Sbjct 162472 TCGTACAGCTTCTTGAAGTCGAAG--GT-------CTTGTCG-TCGT-----TCACAAAC 162516 Query 244670 TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGG 244729 | | || |||| | || |||||||| || || ||||| || | ||||||| | Sbjct 162517 TTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCG 162576 Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 | | |||| ||||||||| || | ||| ||||| |||| ||| || || |||||| Sbjct 162577 AGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 162636 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGG 244849 ||| || | ||||||||| |||||| | ||| || ||||||| ||| | ||||| Sbjct 162637 CGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGG 162696 Query 244850 A-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 | ||| | |||||| | | || || |||| |||| || |||||| |||||| Sbjct 162697 ATCGC-GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTA 162755 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCGGGGCACGACG 244967 | |||||| |||||||||||| |||| || | || ||| | | || | || Sbjct 162756 CTGNTGGTACAGCGCCTCGAACTCGTCACCCC--ACGTNGTGTAGAGACCCGGTGCCTCG 162813 Query 244968 -CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGG 245026 |||||| | || |||||||||||| | ||| || | || ||||||||| ||||| Sbjct 162814 TTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGA 162873 Query 245027 ATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTC 245086 ||||| | || | ||| || || | | | ||| || ||| ||||||| | Sbjct 162874 ATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTG 162933 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 || || | || || |||| |||| ||||||| ||||| | || | |||| | ||| Sbjct 162934 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCC 162993 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTA 245206 |||||| ||| ||||| ||||| | | | ||||||| | |||||| | Sbjct 162994 TTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATG 163053 Query 245207 GGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGG 245266 ||||| | |||||| || |||||| ||||| |||||| | | | | | || | Sbjct 163054 GGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTNGTCGCGCGGATG 163113 Query 245267 TTGCTGATG--GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGA 245324 ||| | | |||| || | |||||||| |||||||||| |||||| ||||| Sbjct 163114 TTGTGCACGCTGACA--CCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGA 163171 Query 245325 TGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACA 245384 ||||| |||||||| || ||| ||||||| |||||| ||||| || |||| Sbjct 163172 GCGTGTCATAGATGCCCTCGATCGAGTCNTCCTTCATGGCGAGCAGGAAGCACGACGACA 163231 Query 245385 GCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGG 245443 |||| |||| || | ||| | ||||||||| || || | ||||| || ||| ||| Sbjct 163232 GCTGCGGGCGCGGCG-TGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTT 163290 Query 245444 CTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT--CTGCA 245501 ||| | | || ||||||||| |||| |||||||||| | |||||| | || Sbjct 163291 TGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACA 163350 Query 245502 G-GGCGCACCTCATGAGGGTGTGCTG-GGGCG-TC-TCGATGGGTCCCTCGGGTCCCTTG 245557 | | ||| | || | | ||||| ||||| || ||| || || | | Sbjct 163351 GCGACGCGCAGAATCA---TCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGC--- 163404 Query 245558 AGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGG 245617 || | ||| || ||||||||||||||| |||||||| ||| |||||||| || | Sbjct 163405 AGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCG 163464 Query 245618 TGCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTG 245676 || ||| || | || ||| | || ||||| | ||| ||| || ||| | | | Sbjct 163465 TGTATGATCGCCGAGTTGAGGCGGTCCTTGTGCTCCATGA-TGATCTGGTAGACGTCCTC 163523 Query 245677 CGCTATGAGGGGAGCCCTGAGCCCGG---TGTCCGGATTGACGTTGAACCAGAGCCTCTT 245733 ||| || || || ||| || |||| | || | ||| | | | ||||| | Sbjct 163524 CGCGATCAGCGGCGCCGGCAGTCCGGTCTTCTCGTGCTTGTTCTGGTAGAAGAGCTCAAT 163583 Query 245734 GCACACCTCCGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGC 245793 | |||||||||| | ||||| ||| |||||||| | || | |||||||| Sbjct 163584 G---TTCTCCGAGAACAGCTTGTTGGTGTTCTTGTGCAGGTTCGAGATCGAGATGCGCGC 163640 Query 245794 CGCCAACTTGCTGTAGTCGGGGTG 245817 ||| | |||||| |||||||||| Sbjct 163641 CGCGAGCTTGCTAAAGTCGGGGTG 163664 >seq6 Length=416345 Score = 324 bits (358), Expect = 3e-83 Identities = 522/741 (70%), Gaps = 19/741 (3%) Strand=Plus/Plus Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 |||| || | || || |||||||| ||| ||| ||||| ||||| |||||||| | | Sbjct 381826 TCAAGCACGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGNGA 381885 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | |||| | ||||||||| ||||||||| |||||||||||||||||||| | Sbjct 381886 TGAACTTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTG 381945 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGG 42588 | || |||||| | ||||| ||||||||| | ||||||| ||||||||||| || Sbjct 381946 CGATTGAGAACATCCACTCGGAGGTGTACTC---GCTGCTCATCGACACGTACATCAAGG 382002 Query 42589 ATC---CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGA 42645 | | |||| || | | | | | | | |||| |||||||| ||||| | ||| Sbjct 382003 ACCAGACCGTAGA-AGAACCACCTTCTNCGCGACCATCGAGACGATCCCCTGTGTGCAGA 382061 Query 42646 AGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG--ACGCAACGTTCGGCGAGAG 42703 ||||||| ||||||||||||| ||| ||| || || ||| |||||| |||| | Sbjct 382062 AGAAGGCCCACTGGGCGCTCAAGTGGTGCGA-CTTCGCGCCGCGCCGCGTTCGCCGAGCG 382120 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTT-CTTCTCGGGCGCCTTCGCCTCCATCT 42762 | || || || | || |||||||||||||| |||||||||| | ||| ||| |||| Sbjct 382121 TATCGTCGCGTTCGCTGCTGTCGAGGGCATCTTACTTCTCGGGCTCGTTCTGCTCTATCT 382180 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 ||||||||||| || | ||||| || |||| |||||||||||| |||||| Sbjct 382181 TCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGC 382240 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| || || | ||||| || ||||| |||| ||| | | ||| ||| Sbjct 382241 GTGACGAGGGTCTCCACTGCGACTTCGCGTGCCTGCTGTACTC---CAAGCTCGCCAACA 382297 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| | | || || ||| | ||||| || || || | |||||||||||||| Sbjct 382298 AGCTCCCCGAGTCTCGCATCCACGAGATCATTCGCGATGCTGTCGCGATCGAGAAGGAGT 382357 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAG 43001 || || | | ||||| || ||| || | || ||||| | || | ||||||||| || Sbjct 382358 TCGTCCAGGACTCGCTCCCGGTGGAGCTCATNGGTATGAA-CTCGTCTCTCATGTGCCAG 382416 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 ||||| ||| | |||||| | ||||| | | | || | | ||||||| Sbjct 382417 TACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGCGTTGCCAAGATCTACAAG 382476 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 | || ||| ||||||| ||||| | |||||| | |||||||||||||||| ||| Sbjct 382477 GTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTC 382536 Query 43122 GAGAAGCGCGTCGCCGACTAC 43142 ||||||||||| | ||| ||| Sbjct 382537 GAGAAGCGCGTGGGCGAGTAC 382557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944325129345920