Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq12 246 4e-60 seq6 183 4e-41 seq480 84.2 3e-11 >seq12 Length=344370 Score = 246 bits (272), Expect = 4e-60 Identities = 1179/1847 (64%), Gaps = 77/1847 (4%) Strand=Plus/Plus Query 113580 TCGCCTTGGCCTTTGATCGG------AGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC 113633 |||| | |||||| | |||| ||||||||||| ||||||||||| |||| ||||| Sbjct 161630 TCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCC 161689 Query 113634 AGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCA 113693 | || || | ||||| || | || |||| || || || | ||| | ||| | Sbjct 161690 ACGCGTAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTGA 161749 Query 113694 TACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCA 113753 ||| ||| ||| || || || || || |||||||| | ||| ||||| Sbjct 161750 GCGACTGGCTTTGGCAAATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCT 161809 Query 113754 TCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATC---CACGA 113810 |||||| |||||||| || |||| | ||| | |||| ||||| | |||| Sbjct 161810 GCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACG- 161868 Query 113811 TATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTT---CATATCCTTTGACCAGA 113867 || || | ||||| | | || || || | || || || | ||||| Sbjct 161869 --TTCTGCACTGAGCCGTG-GTCGTG--CAGGATCTGGTTACGCACCTCGGGCGTCCAGA 161923 Query 113868 GACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGA 113927 || | || |||| |||| || || | ||| || || | ||||| || || | Sbjct 161924 TGCCGAGCTCGATGAGCTCCTTCATNAGGTACTTGTTCACGATCGTGAACTCGCCTGCAA 161983 Query 113928 GGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA 113987 | ||| | || || ||||||||| | ||||| | |||| ||||| || | || Sbjct 161984 GCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGA 162043 Query 113988 TTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTT 114047 | || ||||| || || || ||||| || || | || || ||| || | || | | Sbjct 162044 TCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACT 162103 Query 114048 CCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC-TCCCCCTG---- 114102 | | || ||||||| ||| ||||||| || || | | || | || Sbjct 162104 GCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAG---AGGCCGGACGTCGGCGTGACGC 162160 Query 114103 -CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 |||||| || |||||| ||| || | | | || || ||||| | | |||| | Sbjct 162161 CCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACG 162220 Query 114162 GGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 |||| | ||| ||| | || ||| ||||| | || || |||| |||| Sbjct 162221 GGCCGTGCTCCTTCGCGAGCTCCATCGAG---GCCTCCATCGCGCCGAAGTACAGCGTCT 162277 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA 114277 | || ||| || | | ||||||||| ||||||||| || | || | Sbjct 162278 CGAAGATGTTCTTGTTGAGCTCGCGNGCCTCGTCGCTCTCAAACGCGTAGCC--CATGAG 162335 Query 114278 -ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 114336 || || | ||||||||||| || || |||| ||| || ||||| || | || || Sbjct 162336 GATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC- 162394 Query 114337 CTTTCGAGCGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 114393 |||| ||| ||| | || || | || | ||||| ||| | || || || Sbjct 162395 --TTCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATNTCGATGACCTTGTTGAGGTTGCG 162452 Query 114394 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 114453 ||||| ||||| ||||| || | ||||| | | | || || | | || || || Sbjct 162453 CGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTT 162509 Query 114454 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 114513 ||| |||| | || ||||| ||||| || || ||||| | | ||| || || Sbjct 162510 CACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGT 162569 Query 114514 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTG 114570 |||||| | | || || | || ||| || ||||| | ||||| || Sbjct 162570 GTACTCGAGCACCTCGCAGCAGAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTG 162626 Query 114571 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 114630 || ||||| |||||||| |||||||| |||||||| ||||| |||||||| | || Sbjct 162627 GTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTG 162686 Query 114631 GGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGC 114685 |||| ||| || || ||||| || |||| || | | | | ||| || || Sbjct 162687 CGACTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGG 162741 Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAG 114744 ||||| |||||||| ||| || || || ||||| |||||| ||| | | |||| Sbjct 162742 CCCTCGCGCTCGTACTGNTGGTACAGCGCCTCGAACTCGTCACCCCACGTNGTGT-AGAG 162800 Query 114745 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCAT 114804 || ||||||| | |||||||| || ||| | || ||||||| |||||||| Sbjct 162801 ACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCAT 162860 Query 114805 GAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCC 114863 |||||| || || ||||| | || |||| ||||| ||| ||| || || | | | Sbjct 162861 GAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCT-CGTTGC 162919 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | || || | || | || || | ||| || ||||||||||| || || |||| Sbjct 162920 CGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACA 162979 Query 114924 CCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 ||||| || ||||| || | ||| |||| | ||||| | ||| ||| | || | Sbjct 162980 TCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGA 163039 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGA 115038 | ||||| ||||| || | || || | || ||| || || || || || ||||| Sbjct 163040 ACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAG- 163098 Query 115039 CTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 115098 || | || | || | || | | | |||||| || || |||||||| ||||| Sbjct 163099 -TTNGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCA 163157 Query 115099 CGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAG 115158 ||||||| | |||| || | ||||| || ||||||||||| |||| | |||| || Sbjct 163158 GGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCNTCCTTCATGGCGAGCAG 163217 Query 115159 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 115218 |||||| ||||| || || | || || || |||||||| || || || |||||||| Sbjct 163218 GAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTG 163277 Query 115219 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 115278 |||| | | ||| ||||| | ||||| ||||| | ||||| ||||| | | Sbjct 163278 CGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTT 163337 Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTG-GGGTGTTTCCATC-AGGATACCA 115336 ||| || |||| | ||| |||| || ||| | || ||| | | || | | | ||| Sbjct 163338 GTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCT--CAGCGACCTTGCCA 163395 Query 115337 TCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 ||| | | ||||||| |||||| | ||||||| ||||| || Sbjct 163396 CCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 163442 >seq6 Length=416345 Score = 183 bits (202), Expect = 4e-41 Identities = 364/528 (69%), Gaps = 16/528 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 382557 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 382498 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876 | || || |||||| || | || |||||| | |||| | | |||||| | Sbjct 382497 CCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCAACGCCAAGCGCGTGGAGGAGGC 382439 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | | | |||||||||||| |||| ||||||||||| ||||| | Sbjct 382438 GATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCNATGAGCTCCA 382379 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 ||||||| |||| || |||| ||||||| || | || || || || | ||| ||| Sbjct 382378 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGT 382319 Query 125997 GAATG-GTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA----A 126050 | ||| | | | || | | ||| || |||| |||| | | |||| | Sbjct 382318 GGATGCGAGACTCGGGGAGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCGA 382265 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || |||||||||||||||||| |||||||| || |||||||||| || || |||| Sbjct 382264 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 382205 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAG-AAGATTCCC 126169 | || || |||||||| | |||||| || | || || || ||||||||| ||||| ||| Sbjct 382204 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGTAAGATGCCC 382145 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAACCA 126228 || ||| |||||||| | || |||||| || || | ||||| | ||| |||| Sbjct 382144 TCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAAGTCGCACCA 382085 Query 126229 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGAT 126276 ||| | |||||| || ||||| |||| | ||| |||| |||| ||| Sbjct 382084 CTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAGGGGATCGTCTCGAT 382037 >seq480 Length=19529 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 ||||| || ||||||| ||| || ||||| ||||| || ||| | ||||| ||| || Sbjct 2121 GGGAAGACGCCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 2062 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 172930 || || || ||||| |||| || ||||| || ||| || | || || || || | | Sbjct 2061 GCTGACTCGCCCTCAGTCAGAATCAGCGTGCAGTTTTGAGCCTTCGCTGTGCCGGCGTAG 2002 Query 172931 TTCGCATCGTCCAACTTGGGAATACCAGT 172959 ||||||||||| | ||| || || || || Sbjct 2001 TTCGCATCGTCGAGCTTTGGGATTCCTGT 1973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344699431360