Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq436 113 5e-20 seq58 113 5e-20 seq43 86.0 6e-12 >seq436 Length=23449 Score = 113 bits (124), Expect = 5e-20 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | |||||| || || || |||||||| || | Sbjct 851 ACCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 910 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || |||||||||||||| | || || |||||||| || ||||| Sbjct 911 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 970 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCA--CTGTATCACCGGCGTCC 64393 ||||| || || || || || || ||||| ||| || | |||| | ||| || Sbjct 971 GATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGT-CCGAAGGC-TCG 1028 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | || | ||||||||||||| ||| || ||||| || ||||| || Sbjct 1029 ACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 1081 >seq58 Length=197190 Score = 113 bits (124), Expect = 5e-20 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | |||||| || || || |||||||| || | Sbjct 84935 ACCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 84994 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || |||||||||||||| | || || |||||||| || ||||| Sbjct 84995 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 85054 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCA--CTGTATCACCGGCGTCC 64393 ||||| || || || || || || ||||| ||| || | |||| | ||| || Sbjct 85055 GATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGT-CCGAAGGC-TCG 85112 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | || | ||||||||||||| ||| || ||||| || ||||| || Sbjct 85113 ACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 85165 >seq43 Length=242114 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | |||||| || || || |||||||| || | Sbjct 82738 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 82797 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || |||||||||||||| | || || |||||||| || ||||| Sbjct 82798 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 82857 Query 64336 AATTCCT 64342 |||||| Sbjct 82858 GATTCCT 82864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499637355292480