Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq12 439 2e-118 >seq12 Length=344370 Score = 439 bits (486), Expect = 2e-118 Identities = 1236/1885 (66%), Gaps = 66/1885 (4%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||||| |||||| || || ||||||||||||||||| | | ||||| | Sbjct 163448 TACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGGCAAG 163389 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| ||| || | |||||||||| |||| || ||| || ||| Sbjct 163388 GTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGAC 163329 Query 93838 AT----GCCGAATGTTTTGCGGGCTTTCAGAG-ACATGCGGGACAAGAGGTATACCATG- 93891 || |||| | | || | | ||| ||||| | ||| || | || | Sbjct 163328 ATCGACGCCGC--GCT---CGAGACGTACGAGTACATGTCG--CAA-AGCTTCTTCACGC 163277 Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 || || ||||| ||||||||||| || || ||| || ||| |||| ||||| |||| Sbjct 163276 ACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCC 163217 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | | | |||| ||||| ||| || || | |||| |||||| | || || Sbjct 163216 TGCTCGCCATGAAGGANGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCT 163157 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| || | || || || || || |||| || ||| || | || || | | Sbjct 163156 GCATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACNAACT 163097 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | |||||||| || || || ||| | || ||||||||||| || ||||| || || |||| Sbjct 163096 CGTACATCCGTGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCA 163037 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 || || ||||||| || ||||| |||||||| || | | | ||||| || |||||| | | Sbjct 163036 ACGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGT 162977 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 |||||||||| |||||||| ||| | | ||| ||||||| ||||||||||||| Sbjct 162976 ATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCA 162917 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 |||| ||| | | || | || || |||||||| | ||| | || || || || |||| Sbjct 162916 ACGAGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCATGA 162857 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | ||||| ||| ||| || ||||| || || || || || || || || || | Sbjct 162856 AGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCTCT 162797 Query 94370 --CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCA 94426 | |||| | || || | || || | |||| | |||| | ||| ||||| Sbjct 162796 ACACNACGTGGGGTGA-CGAG-TTCGAGGCGCTGTACCANCAGTACG-AGCGCGAGGGCC 162740 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | ||| || || | |||| ||| |||| | || ||| | | Sbjct 162739 GCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCG 162680 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAG 94545 ||||||| ||||| ||||| ||| ||||||||| ||| ||| |||||| ||||||||| Sbjct 162679 AGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGT-AACCGCAAGTCGAACCAGCAG 162621 Query 94546 CACCTCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 ||||||| |||| ||||| || || ||| |||| | ||||||| || || Sbjct 162620 AACCTCGGCACGATC---CGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACACGTCG 162564 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGAT 94662 || |||||| | || ||||| ||||| | |||||| ||||||| || ||| | Sbjct 162563 CCCGACGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTG---AAC 162507 Query 94663 GCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG 94722 | | ||| | | ||||| | || |||| || || | |||| | Sbjct 162506 GACGACAAG---------ACCTTCGACTTCAAGAAGCTGTACGACATCAC--CAAGG-TC 162459 Query 94723 GTCTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAG 94779 ||| | ||||| |||| ||| ||||| | |||| |||||| |||| ||||| ||| Sbjct 162458 GTCACGCGCAACCTCAACAAGGTCATCGANATCAACTACTACCCGATCCCCGAGGCCGAG 162399 Query 94780 AACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTG 94839 |||||| || || || |||||||||||||| |||||| ||||||||||| | Sbjct 162398 CGAAGCAACCTGCGCCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGTTC 162339 Query 94840 GTGATGATGCGTCTGCCCTACGACTCTG---TCGACGCGGCG---GGTTTGAATTTGAAC 94893 | | ||| | ||||| | || ||||| ||| | | || |||| Sbjct 162338 ATCCTCATGGG------CTACGCGTTTGAGAGCGACGAGGCNCGCGAGCTCAACAAGAAC 162285 Query 94894 ATATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGAC 94953 || ||||| | | || | ||| || ||| | || | | | || | ||| Sbjct 162284 ATCTTCGAGACGCTGTACTTCGGCGCGATGGAGGCCTCGATGGAGCTCGCGA---AGGAG 162228 Query 94954 GGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGAC 95013 ||| || ||| | | || || ||| || ||||||| || |||| |||| Sbjct 162227 CACGGCCCGTACGCCAGCTACGAGGGCTCACCCGTGAGCAAGGGCATCTTCCAGTACGAC 162168 Query 95014 CTCTGGGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTT 95070 | ||||| || | || | || || || | ||||||| || || || || Sbjct 162167 ATGTGGGGCGTCACGCCGACGTCCGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTC 162108 Query 95071 ATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCG 95130 | |||| ||| ||| ||||||| | || || ||||| ||||| || || ||| Sbjct 162107 GCGCAGTACGGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCG 162048 Query 95131 CAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGG 95190 |||||||| ||||||||||||||| |||| || ||||| ||||| |||||||| | || Sbjct 162047 CAGATCCTCGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGC 161988 Query 95191 GTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTG 95250 ||||| || || || ||| | || | |||||| |||| | ||| || | || Sbjct 161987 GTGCTTGCAGGCGAGTTCACGATCGTGAACAAGTACCTNATGAAGGAGCTCATCGAGCTC 161928 Query 95251 GGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAAC 95310 || | ||| | |||| ||||| | || | || | ||||||| || |||||| Sbjct 161927 GGCATCTGGACGCCCGAGGTGCGTAACCAGATCCTGCACGACCACGGCTCAGTGCAGAAC 161868 Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 | | || ||||| | | | |||| | |||||||| |||||||||||| |||| Sbjct 161867 GTGCGCGTGATCCCGGATGCCGTGAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAG 161808 Query 95371 CGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNN 95430 | | ||||| || |||| |||||| ||| ||| ||||| || Sbjct 161807 AAGGCCGTGCTCGATATGGCCGCCGACCGCGGCGCCTACATTTGCCAAAGCCAGTCGCTC 161748 Query 95431 NNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGG 95490 || |||||||| | | | || | ||||||||| ||||||| |||| Sbjct 161747 AACGTGCACATCGCCGAGCCGACGATCAGCAAGCTGACGTCCATGCACTTCTACGCGTGG 161688 Query 95491 AGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATA 95550 | |||||||||||||| |||||||| || |||| | | | || ||||| || | || Sbjct 161687 AAGAAGGGTCTCAAGACGGGTATGTACTACCTGCGCAGCCGACCGAAGGCCGATGCGATC 161628 Query 95551 CAGTTCGCCCTAGAAAAGTCGGTCA 95575 |||||| | | || ||| ||| || Sbjct 161627 CAGTTCACGGTCGACAAGGCGGCCA 161603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494715828624320