Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12 176 4e-39 seq436 145 7e-30 seq58 145 7e-30 seq150 143 3e-29 seq575 141 9e-29 seq378 105 6e-18 >seq12 Length=344370 Score = 176 bits (194), Expect = 4e-39 Identities = 375/552 (68%), Gaps = 25/552 (5%) Strand=Plus/Plus Query 145661 CTTCCGTGCCGTCGTCGT--CCATTTTGCGTTTCTTGCCGCACGA-GGCCGCCGCTTCGG 145717 |||| ||||||||||||| || |||||| ||| ||| ||||||| || Sbjct 161568 CTTCTGTGCCGTCGTCGTGGCC----TGCGTT------CGCTCGATGGCCGCC--TT--- 161612 Query 145718 CGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGG 145777 |||||| |||||||| |||| | || |||| ||||||| |||||||| || | Sbjct 161613 -GTCGACCGTGAACTGGATCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCG 161671 Query 145778 TCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGG 145835 ||||||| |||| ||||| ||| ||||| ||| || || | | || ||| || Sbjct 161672 TCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGAT--CGTCGG 161729 Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGG 145894 ||||||| || || || || ||||| || |||| | || ||| |||||||||| Sbjct 161730 CTCGGCGATGTGCACGTTGAGCGACTGGCTTTGGCAAATGTA-GGCGCCGCGGTCGGCGG 161788 Query 145895 CCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT 145954 |||| || | || | ||| || || ||||| | || || | ||||| ||| Sbjct 161789 CCATATCGAGCACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGG 161848 Query 145955 GCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCA 146014 | || || || | ||||||||| || || | ||| || || | ||| |||| Sbjct 161849 CATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGATCTGGTTACGCA 161908 Query 146015 ATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCT 146074 || || || | ||| | || | ||| |||| || || |||| ||| || | | Sbjct 161909 CCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATNAGGTACTTGTTCACGATCG 161968 Query 146075 GAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACT 146134 |||||||| || || ||||| | |||| |||| | ||||||||||||| ||||| Sbjct 161969 TGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACT 162028 Query 146135 CGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGT 146194 ||||||| ||||| |||||||| |||| || || ||||| ||| | ||||| |||| Sbjct 162029 CGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGT 162088 Query 146195 TTCTCACGCCGT 146206 | | |||||||| Sbjct 162089 TGCGCACGCCGT 162100 >seq436 Length=23449 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | ||| ||||| || || || ||||| || Sbjct 849 GCACCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 908 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | |||||| ||| || ||||| || || ||| |||||| ||||||||||| ||| Sbjct 909 GAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGA 968 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| |||||||||| | || | | |||||| | |||| Sbjct 969 GGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCG 1028 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||| |||||||||||||| || || || |||||||| Sbjct 1029 ACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 1078 >seq58 Length=197190 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | ||| ||||| || || || ||||| || Sbjct 84933 GCACCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 84992 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | |||||| ||| || ||||| || || ||| |||||| ||||||||||| ||| Sbjct 84993 GAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGA 85052 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| |||||||||| | || | | |||||| | |||| Sbjct 85053 GGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCG 85112 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||| |||||||||||||| || || || |||||||| Sbjct 85113 ACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 85162 >seq150 Length=112013 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 82378 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 82437 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||||| |||||||| || || || Sbjct 82438 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 82497 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||| | |||| |||| | ||||| |||||| Sbjct 82498 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCGAC 82556 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| ||||| || || ||||| |||||||| Sbjct 82557 ATCGAGTGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 82604 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 90893 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 90834 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||||| |||||||| || || || Sbjct 90833 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 90774 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||| | |||| |||| | ||||| |||||| Sbjct 90773 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCGAC 90715 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | || | ||| ||||| ||||| || || ||||| |||||||||| Sbjct 90714 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGG 90665 >seq575 Length=11535 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 2015 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 1956 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||||| |||||||| || || || Sbjct 1955 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 1896 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||| | |||| |||| | ||||| |||||| Sbjct 1895 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCGAC 1837 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | || | ||| ||||| ||||| || || ||||| |||||||||| Sbjct 1836 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGG 1787 >seq378 Length=32279 Score = 105 bits (116), Expect = 6e-18 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 169 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 110 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||||| |||||||| || || || Sbjct 109 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 50 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055 ||||||||||||||| || |||||||| | |||| |||| | ||||| Sbjct 49 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493715038080