Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12 147 2e-30 seq150 102 7e-17 seq575 96.9 3e-15 >seq12 Length=344370 Score = 147 bits (162), Expect = 2e-30 Identities = 297/436 (68%), Gaps = 9/436 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 |||||||| || || || || ||| | ||||||||||| | ||| | ||| | Sbjct 163391 AAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCAT 163332 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| |||| ||| || ||||| | ||||| |||| || |||||||||||| Sbjct 163331 GACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCG 163272 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || ||||| |||||||||| | || ||| |||| ||||| || ||||| Sbjct 163271 ACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTC 163212 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||| ||| || |||||||| || | | ||||| | || Sbjct 163211 GCCATGAAGGANGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATC 163152 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG- 123196 ||||| | | ||||||||| || || | ||||||| || | | | || || || Sbjct 163151 TCCAAGTGGGCCGGCGGCATTGGTGTCAGCGTGCACAACATCCGCG--CGACNAACTCGT 163094 Query 123197 -CATCAGAAGCACCGACGGAATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | |||| |||| ||| | ||| |||| |||||||||| || | ||| Sbjct 163093 ACATCCGTGGCACGAACGG-CTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAAC 163035 Query 123255 AACGCCGTGCGGCACGTCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| | || || ||| |||||||| ||||| ||| || | ||||| ||| Sbjct 163034 GACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTAT 162975 Query 123312 CTAGAACCGTGGCACG 123327 || || |||||||||| Sbjct 162974 CTCGAGCCGTGGCACG 162959 >seq150 Length=112013 Score = 102 bits (112), Expect = 7e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || ||| || |||||||| || ||||| ||||| || || || | Sbjct 82378 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC--G 82435 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| |||| || || || ||| | |||| || ||||||||||||| Sbjct 82436 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCG 82495 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | ||||| || || || ||||| || || || | || | || | | ||| || | |||| Sbjct 82496 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCG 82554 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | ||| ||||| || || || || ||||| || |||||| Sbjct 82555 ACATCGAGTGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATC 82605 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || ||| || |||||||| || ||||| ||||| || || || | Sbjct 90893 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC--G 90836 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| |||| || || || ||| | |||| || ||||||||||||| Sbjct 90835 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCG 90776 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | ||||| || || || ||||| || || || | || | || | | ||| || | |||| Sbjct 90775 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCG 90717 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| ||||| || || || || ||||| || ||||| Sbjct 90716 ACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 90667 >seq575 Length=11535 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || ||| || |||||||| || ||||| ||||| || || || | Sbjct 2015 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC--G 1958 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| |||| || || || ||| | |||| || ||||||||||||| Sbjct 1957 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCG 1898 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 | ||||| || || || ||||| || || || | || | || | | ||| || | |||| Sbjct 1897 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCG 1839 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| ||||| || || || || ||||| || ||||| Sbjct 1838 ACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996465152320