Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12 253 3e-62 seq6 187 3e-42 seq480 89.7 6e-13 >seq12 Length=344370 Score = 253 bits (280), Expect = 3e-62 Identities = 1187/1859 (64%), Gaps = 71/1859 (4%) Strand=Plus/Plus Query 115541 TCGCCTTGGCCTTTGATCGG------AGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC 115594 |||| | |||||| | |||| ||||||||||| ||||||||||| |||| ||||| Sbjct 161630 TCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCC 161689 Query 115595 AGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCA 115654 | || || | ||||| || | || |||| || || || | ||| | ||| | Sbjct 161690 ACGCGTAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTGA 161749 Query 115655 TACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCA 115714 ||| ||| ||| || || || || || |||||||| | ||| ||||| Sbjct 161750 GCGACTGGCTTTGGCAAATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCT 161809 Query 115715 TCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATC---CACGA 115771 |||||| |||||||| || |||| | ||| | |||| ||||| | |||| Sbjct 161810 GCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACG- 161868 Query 115772 TATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTT---CATATCCTTTGACCAGA 115828 || || | ||||| | | || || || | || || || | ||||| Sbjct 161869 --TTCTGCACTGAGCCGTG-GTCGTG--CAGGATCTGGTTACGCACCTCGGGCGTCCAGA 161923 Query 115829 GACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGA 115888 || | || |||| |||| || |||| ||| || || | ||||| || || | Sbjct 161924 TGCCGAGCTCGATGAGCTCCTTCATNAGGTACTTGTTCACGATCGTGAACTCGCCTGCAA 161983 Query 115889 GGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA 115948 | ||| | || |||||||||||| | ||||| | |||| ||||| || | || Sbjct 161984 GCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGA 162043 Query 115949 TTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCC 116008 | || || || || || || ||||| || || | || || |||||| | || | Sbjct 162044 TCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACT 162103 Query 116009 CCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTCCC 116065 | | || ||||||| ||| ||||||| || | ||| | | ||| Sbjct 162104 GCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCC 162163 Query 116066 ACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGC 116125 |||| || |||||| ||| || | | | | || || ||||| | | | || |||| Sbjct 162164 ACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGC 162223 Query 116126 CCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | | ||| ||| | || ||| ||||| | || || |||| ||||| | Sbjct 162224 CGTGCTCCTTCGCGAGCTCCATCGAG---GCCTCCATCGCGCCGAAGTACAGCGTCTCGA 162280 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGCACAAA-AT 116240 | ||| || | | ||||||||| ||||||||| || | || | || Sbjct 162281 AGATGTTCTTGTTGAGCTCGCGNGCCTCGTCGCTCTCAAACGCGTAGCC--CATGAGGAT 162338 Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 || | ||||||||||| || || |||| ||| || ||||| || | || || | Sbjct 162339 GAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---T 162395 Query 116301 TCGAGCGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357 ||| ||| ||| | || || | || | ||||| ||| | || || || || Sbjct 162396 TCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATNTCGATGACCTTGTTGAGGTTGCGCGT 162455 Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 116417 ||| ||||| ||||| || | ||||| | | | || || | | || || || || Sbjct 162456 GACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTTCAC 162512 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | |||| | || ||||| ||||| || || ||||| | | ||| || ||||| Sbjct 162513 AAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTA 162572 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATT 116534 ||| | | || || | || ||| || ||||| | ||||| || || Sbjct 162573 CTCGAGCACCTCGCAGCAGAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTT 162629 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||||| |||||||| |||||||| ||||| || ||||| |||||||| | || || Sbjct 162630 CGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGA 162689 Query 116595 CTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCC 116649 || ||| || || ||| | || |||| || | | | | ||| || || ||| Sbjct 162690 CTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCC 162744 Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTG-AGAGCCC 116708 || |||||||| ||| || ||||| ||||| |||||| || || |||| || Sbjct 162745 TCGCGCTCGTACTGNTGGTACAGCGCCTCGAACTCGTCACCC-CACGTNGTGTAGAGACC 162803 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 ||||||| | || ||||| || ||| | || ||||||| ||||||||||| Sbjct 162804 CGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAA 162863 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCT 116827 ||| || || ||||| | ||| |||| ||||| ||| ||| || || | | || | Sbjct 162864 GAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCT-CGTTGCCGT 162922 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 | || | || | || || | ||| || ||||||||||| || || |||| || Sbjct 162923 GGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCG 162982 Query 116888 CGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 ||| || |||||||| | ||| |||| | ||||| | |||||| |||| || | Sbjct 162983 CGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACA 163042 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTT 117002 |||| ||||| || | || || | || ||| || || || || || ||||| || Sbjct 163043 CGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAG--TT 163100 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 | || | || | ||| | | | |||||| || || |||||||| ||||| || Sbjct 163101 NGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGC 163160 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 ||||| | |||| || | ||||| || ||||||||||| |||| | |||| ||||| Sbjct 163161 GCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCNTCCTTCATGGCGAGCAGGAA 163220 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 ||| ||||| || || | || || || |||||||| || || || |||||||| | Sbjct 163221 GCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGT 163280 Query 117183 GAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242 ||| | | ||| ||||| | ||||| ||||| | | | | ||||| | | ||| Sbjct 163281 GAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTG 163340 Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTG-GGGTGTTTCCATC-AGGATACCATCG 117300 || |||| | ||| |||| || ||| | || ||| | | || | | | ||| || Sbjct 163341 GATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCT--CAGCGACCTTGCCACCG 163398 Query 117301 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 | | | ||||||| |||||| | ||||||| ||||| ||| | | ||| |||| Sbjct 163399 ACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTC 163457 >seq6 Length=416345 Score = 187 bits (206), Expect = 3e-42 Identities = 365/530 (69%), Gaps = 20/530 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| || | ||| ||| | ||||| Sbjct 382557 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 382498 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 | || || |||||| || | || |||||| | |||| | | |||||| | Sbjct 382497 CCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCAACGCCAAGCGCGTGGAGGAGGC 382439 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | | | |||||||||||| |||| ||||||||||| ||||| | Sbjct 382438 GATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCNATGAGCTCCA 382379 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||||||| |||| || |||| ||||||| || | ||||| || || | ||| ||| Sbjct 382378 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGT 382319 Query 127470 GAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-----CAA 127523 | || | | | || | | ||| || |||| |||| | ||| | | Sbjct 382318 GGATGCGAGACTCGGGGAGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCGA 382265 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || |||||||||||||||||| |||||||| || |||||||||| || || |||| Sbjct 382264 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 382205 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG-AAGATCCCC 127642 | || || |||||||| | |||||| || | || || ||||| |||||| ||||| ||| Sbjct 382204 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGTAAGATGCCC 382145 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGAGCGGGACTTTGTATCAAAC 127699 || ||| |||||||| | | ||||||||| || || |||| | | || || Sbjct 382144 TCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAAG--TCGCAC 382087 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGAT 127749 ||||| | |||||| || ||||| |||| | ||| |||| |||| ||| Sbjct 382086 CACTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAGGGGATCGTCTCGAT 382037 >seq480 Length=19529 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 ||||| || ||||||| ||| || ||||| |||||||| ||| | ||||| ||| || Sbjct 2121 GGGAAGACGCCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 2062 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 176950 || || || ||||| |||| || ||||| || ||| || | || || || || | | Sbjct 2061 GCTGACTCGCCCTCAGTCAGAATCAGCGTGCAGTTTTGAGCCTTCGCTGTGCCGGCGTAG 2002 Query 176951 TTCGCATCGTCCAACTTGGGAATACCAGT 176979 ||||||||||| | ||| || || || || Sbjct 2001 TTCGCATCGTCGAGCTTTGGGATTCCTGT 1973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613498058742720