Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq12 255 9e-63 seq6 104 4e-17 seq247 87.8 3e-12 >seq12 Length=344370 Score = 255 bits (282), Expect = 9e-63 Identities = 534/780 (68%), Gaps = 21/780 (3%) Strand=Plus/Plus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGC---AGGCCTGCTTCTCAGATAGTA 203892 || |||||| ||||||||||| || || | |||| || | ||| | ||| ||||| Sbjct 161607 CGCCTTGTCGACCGTGAACTGGATCGCAT---CGGCCTTCGGTCGGCTGCGCAGGTAGTA 161663 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| || ||||| || ||||||| |||| |||| | ||||||||| | ||| ||||| | Sbjct 161664 CATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGAT 161723 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 | || ||||| ||||| | ||| || |||||||||||| ||| ||||||| || | Sbjct 161724 CGTCGGCTCGGCGATGTGCACGTTGAGCGACTGGCTTTGGCAAATG-TAGGCGCCGCGGT 161782 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | |||||||||| || | || ||||||| |||||||||||||||||| || || Sbjct 161783 CGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCT 161842 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT- 204129 | | | || | | | ||||| ||| | ||||||| |||| || | ||| Sbjct 161843 TCACGGCATCCGGGATCAC-GCGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGA-TCTG 161900 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 | | | ||| | ||| ||||| | | ||| |||||| || |||| ||| Sbjct 161901 GTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATNAGGTACTTGTT 161960 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 | |||| || || || | ||||| | ||| || ||| |||| | ||||| || || Sbjct 161961 CACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTC 162020 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 || || |||||||||||||| ||||| ||||| ||||| ||||| || || || || Sbjct 162021 GATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAG 162080 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA- 204368 ||| ||||||||||| ||||| | ||| ||| ||| || | || |||||| | Sbjct 162081 CAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAG 162140 Query 204369 -TCGCAC-TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 || || | || | ||||||||||||||| |||| |||||||| | || || || Sbjct 162141 GCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGA 162200 Query 204427 GCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGC 204486 ||||| ||| | | || || | ||| | || |||| |||||| |||| || Sbjct 162201 GCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTCCATCGAGGCCTCCATCGC 162260 Query 204487 GTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTC--CGTTCCGTC 204543 | |||||| ||||| ||||| | | || | || ||| ||||| || || || Sbjct 162261 GCCGAAGTACAGCGTCTCGAAGATGTTCTTG-TTGAGCTCGCGNGCCTCGTCGCTC--TC 162317 Query 204544 AAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 |||||| |||| | | ||| ||||||| | |||||||| ||||| || | ||| Sbjct 162318 AAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGG 162377 Score = 125 bits (138), Expect = 1e-23 Identities = 444/677 (66%), Gaps = 26/677 (4%) Strand=Plus/Plus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 ||||||||| |||||||||||||| ||||||||||||| |||| ||||| | || |||| Sbjct 162621 CTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTC 162680 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTTCACG 205045 ||||| || ||| || || | ||| | | |||| | || ||||| || Sbjct 162681 GATCTGCGACTCG-AGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCG---CG 162736 Query 205046 TACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC 205105 | |||| | | |||||| | |||||||||| | || || ||| ||||| Sbjct 162737 CGCGGCCCTCGCG-CTCGTACTGNTGGTACAGCGCCTCGAACTCGTCACCC--CACGTNG 162793 Query 205106 ATCAG---CCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACC 205162 || ||| | | | || ||| || | ||| |||| | | | | || Sbjct 162794 TGTAGAGACCCGGTGCCTCGTTCGGG-CAGAACAGGCTCCACTCGCCGTTGGCCTCAACG 162852 Query 205163 CTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCG 205222 | || ||| || || ||| ||||||| |||| ||||||||||| || | | | | Sbjct 162853 CGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGG-TGCAG 162911 Query 205223 -TCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCT 205280 |||| || ||||||| || | ||| || || || | ||||||||||||||||||| Sbjct 162912 CTCGTTGCCGTGGTTCTTCTTGAGGTCGAGG-AACTCGAAGATGTCGGCGTGCCACGGCT 162970 Query 205281 CTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCA 205340 | | ||| || | | ||| | |||| |||||||| ||||| || | | Sbjct 162971 CGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCG 163030 Query 205341 TCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGA 205400 | ||||||| || |||||||| ||||| || ||||| | | |||||||||| || Sbjct 163031 TGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGA 163090 Query 205401 TGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGG 205460 || |||| || | | |||| | | | ||||| ||||| | ||||||| Sbjct 163091 TGTACGAGTTNGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGG 163150 Query 205461 CGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGT 205519 ||| |||||||| |||| || ||| |||||||| |||| || || ||| || Sbjct 163151 AGATGCAGGCGCACTGCTTG-AGCGTGTCATAGATGCCCTCGATCGAGTCNTCCTTCATG 163209 Query 205520 GTCACCAGATAGCACGAAGCCAGCT--TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGG 205577 | | ||| ||||||| | ||||| ||| | ||||| |||| ||| ||||| | Sbjct 163210 GCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGG--CGTGCCGGCGTTGAACAGCGTCG 163267 Query 205578 GGCTGGCGTGGCTGAAG 205594 | | ||||| ||||| Sbjct 163268 GCGTCGCGTGCGTGAAG 163284 >seq6 Length=416345 Score = 104 bits (114), Expect = 4e-17 Identities = 119/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| |||||||| ||||||||||| || |||||||| || ||||||| |||||| || | Sbjct 382279 ACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGA 382220 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAAT--GGCCGCAAAAGCACC 160032 | ||||||| ||||| | || ||| |||||||| || || || | | ||| || Sbjct 382219 AGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGC-CC 382161 Query 160033 GCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGA 160070 | || ||||| ||||| || || || ||||| |||| Sbjct 382160 GAGAAGTAAGATGCCCTCGACAGCAGCGAACGCGACGA 382123 >seq247 Length=71432 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 116094 TCGTGTCTGTTTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCG 116153 ||||| | | | ||||| | || || |||||||| | ||||| || |||||| ||||| Sbjct 59615 TCGTGNCAGATGTACCAGCGCTCAGCTGACATGGGACTCGGCGTGCCTTTTAACATTGCG 59674 Query 116154 AGCTACGCGCTACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTG 116213 ||||||||||| |||||| | || || || | | | ||| | ||||| || Sbjct 59675 AGCTACGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGTGCTGGAGACTTC 59734 Query 116214 ATACACTCTATTGGGGACGCGCACATCTACACCAACCATGTGG 116256 || ||| | || || || |||||||||||| |||||||||| Sbjct 59735 ATCCACACGATCGGCGATGCGCACATCTACTTGAACCATGTGG 59777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795143352187520