Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 223 3e-53 seq150 132 5e-26 seq575 131 2e-25 seq436 125 7e-24 seq58 125 7e-24 seq378 107 2e-18 >seq6 Length=416345 Score = 223 bits (246), Expect = 3e-53 Identities = 393/564 (70%), Gaps = 12/564 (2%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||| || |||||||| || | |||||||| | || ||||| ||||| || Sbjct 382279 ACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGA 382220 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | ||| ||||| |||||||| || |||||||| || || | | ||| ||||| Sbjct 382219 AGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCG 382160 Query 133007 AAAAG-AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 | ||| |||| ||||||||| || ||||| || || | |||||| |||||| ||| | Sbjct 382159 AGAAGTAAGATGCCCTCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCG-CG 382101 Query 133066 TTGCT--GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || | || ||| |||||||| | |||||| | | || || || ||||| | Sbjct 382100 GCGCGAAGTCGCACCACTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAGGGGATCGTCT 382041 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA---GGAACGC-ACGTAGGTGTCGATG 133179 |||||| | || || | |||| | || || | | ||| ||||||||| Sbjct 382040 CGATGGTCGCGNAGAA--GGTGGTTCTTCTACGGTCTGGTCCTTGATGTACGTGTCGATG 381983 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 || ||| |||| |||||||| | |||||| || || || || |||||||| ||||| Sbjct 381982 AGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAA 381923 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 |||||||| |||||||| || ||| | | || || |||||||||||| Sbjct 381922 CGCGCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCATCNCGAGGTTCTCGTTGACGATG 381863 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 || || ||||| ||||| || || |||||||||||||| || | |||||||||||| | Sbjct 381862 CCATCACTGGCCGCGAAGAACGCGAGCACGTGCTTGATAAAGTAGCGCTCGTTGTCCGTG 381803 Query 133360 AAGCGCTCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGA 133418 | | | |||||| | | | | || || ||||| | ||| || | ||||| || Sbjct 381802 AGGTTGTTCCAGTC-CTTGAGGTCGTGCACGAGGTCGATCTCTTCAGCCGTCCAGAAGCT 381744 Query 133419 CGCCTCGGCTTTTTTGTACATACT 133442 |||||| || || ||||||||||| Sbjct 381743 CGCCTCAGCCTTCTTGTACATACT 381720 >seq150 Length=112013 Score = 132 bits (146), Expect = 5e-26 Identities = 174/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || || || || ||||| |||||||| || ||||| |||| |||||| Sbjct 82610 AACAAGATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACACTCGATGTCGAG 82551 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | ||| | | |||| | || | || || | ||||| ||||| || ||||| Sbjct 82550 CCGTCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCAT-CCCGC 82493 Query 38357 CG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 || |||| ||||| || || | ||| ||||| |||||||| || | ||||| || | Sbjct 82492 CGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGG 82433 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 82432 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 82377 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| || ||||| | ||||||||| | | Sbjct 90667 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCGTCG 90726 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 ||| | | |||| | || | || || | ||||| ||||| || ||||||| ||| Sbjct 90727 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 90784 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 90785 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACA 90844 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 90845 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 90894 >seq575 Length=11535 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| || ||||| | ||||||||| | | Sbjct 1789 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCGTCG 1848 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 ||| | | |||| | || | || || | ||||| ||||| || ||||||| ||| Sbjct 1849 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 1906 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 1907 AGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACA 1966 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 1967 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 2016 >seq436 Length=23449 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || || || ||||| || ||||| ||||||||||| | Sbjct 1082 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 1023 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||||| | | | | || | || |||| ||||| |||||||| || | || Sbjct 1022 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 963 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| ||||| || || | ||||| ||| ||||| Sbjct 962 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTA 903 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||||||| || | ||||| || Sbjct 902 CAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCG 864 >seq58 Length=197190 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || || || ||||| || ||||| ||||||||||| | Sbjct 85166 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 85107 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||||| | | | | || | || |||| ||||| |||||||| || | || Sbjct 85106 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 85047 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| ||||| || || | ||||| ||| ||||| Sbjct 85046 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTA 84987 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||||||| || | ||||| || Sbjct 84986 CAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCG 84948 >seq378 Length=32279 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| ||||| || ||||||| |||| ||||| || || | ||| ||||| |||||||| Sbjct 36 GACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGA 94 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || | ||||| || |||||||||||||| ||||| |||||||||| ||||||| Sbjct 95 GGATGGCCGCACGCTGTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 154 Query 38456 GCGTTTGAGAGGCGGC 38471 |||| || | || ||| Sbjct 155 GCGTCTGCGTGGTGGC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165347425280