Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq12 179 5e-40 seq6 134 2e-26 >seq12 Length=344370 Score = 179 bits (198), Expect = 5e-40 Identities = 1096/1741 (63%), Gaps = 35/1741 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| | ||| | |||| ||||| |||| ||||| | | || || || | | Sbjct 163377 CCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGACATCGACGCCGC 163318 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||||| | ||||| | | | |||| ||||| || || || || || Sbjct 163317 GCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTT 163258 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || | || || |||| || ||||| | || | ||||| || Sbjct 163257 CAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGANGA 163198 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| || | ||| |||| | || ||| ||||| |||||||| || Sbjct 163197 CTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGG 163138 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 || || || | | | || | || | || | || |||||| | | || || Sbjct 163137 CGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACNAA--CTCGTACATCCGTGGCACG 163080 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | || | | || ||||| ||||| || |||| ||| ||||| ||| Sbjct 163079 AACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTAT 163020 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || | || | ||| | |||||||| || |||| | ||||| ||||| |||||| Sbjct 163019 GTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTGGCAC 162960 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || ||| | |||||||| || | ||||| || | ||| | | | | || Sbjct 162959 GCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAACGAGCTG-CACCGCGC 162901 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || ||||| |||| ||| | |||||||| ||||||||||||||| | ||||||| | Sbjct 162900 TCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTGAGGCCAA 162841 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT-GGGTG 112203 ||| | ||| || || || || || ||||||| ||||||| | | ||| ||||| Sbjct 162840 CGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCTCTAC-ACNACGTGGGGTG 162782 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGC 112263 | ||||| || || || ||| |||||||| || | || ||| |||| | | Sbjct 162781 ACGAGTTCGAGGCGCTGTACCANCAGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATCC 162722 Query 112264 CAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 || || | | | ||| || || ||| |||| || | |||||| || || || || Sbjct 162721 GCGC-GCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTAC 162663 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT---C 112379 ||||| ||||| ||| | ||||||| ||| || || |||| | || ||| | Sbjct 162662 ATGCTGTACAAGGACTCGTGTAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGC 162603 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 ||| ||||||||| || | | || | || || ||| || ||| Sbjct 162602 TCGAG---CAACCTCTGCTGCGAGGTGCTCGAGTACACGTCGCCCGACGAGGTCGCGGTG 162546 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499 || |||||||| || ||||| || |||||| |||| | | ||| ||||| || || Sbjct 162545 TGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAA--CGACGAC-AAGACCTTCGAC 162489 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | || || |||| | || || ||||| ||||| |||| || || || Sbjct 162488 TTCAAGAAGCTGTACGACATCACCAAGGTCGTCACGCGCAACCTCAACAAGGTCATCGAN 162429 Query 112560 AGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 | || | ||||| | ||| | | || || | || || | ||||| || || Sbjct 162428 ATCAACTACTACCCGATCCCCGAGGCCGAGCG--AAGC-AACCTGCGCCACCGCCCGATC 162372 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 || |||| || || ||||||||||| | ||||| || || |||| ||||| | Sbjct 162371 GGCATCGGCGTGCAGGGTCTCGCGGACGCGTTCATCCTCATGGGCTACGCGTTTGAGAGC 162312 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 ||||| || || |||| | || || ||||| |||| || ||| | ||| Sbjct 162311 GACGAGGCNCGCGAGCTCAACAAGAACATCTTCGAGACGCTGTACTTCGGCGCGATGGAG 162252 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || |||| | || ||| | || || || | | || ||||| || || | | Sbjct 162251 GCCTCGATGGAGCTCGCGAAGGAGCACGGCCCGTACGCCAGCTACGAGGGCTCACCCG-T 162193 Query 112797 TCACAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAGCT----TCACTACG 112851 |||||| ||| || | || ||||||| || | || | | | || | Sbjct 162192 GAGCAAGGGCATCTTCCAGTACGACATGTGGG-GCGTCACGCCGACGTCCGGCCTCTGGG 162134 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 |||||| ||| ||||||| || || | || | || | || ||| || || | | Sbjct 162133 ACTGGGCCGCGCTCAAGGCCAGCGTCGCGCAGTACGGCGTGCGCAACTCGCTGCTGCTCG 162074 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || || || ||||| || ||| | || || || || | | || || | Sbjct 162073 CGCCGATGCCGACGGCGTCGACCGCGCAGATCCTCGGCAACAACGAGTCGATCGAGCCGT 162014 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 |||||| ||||| || | | || || || ||||| ||| || |||||| Sbjct 162013 TCACGACCAACATGTACAACCGCCGCGTGCTTGCAGGCGAGTTCACGATCGTGAACAAGT 161954 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 | || || | || |||| ||| | || ||||| | || || | | || Sbjct 161953 ACCTNATGAAGGAGCTCATCGAGCTCGGCATCTGGACGCCCGAGGTGCGTAACCAGATCC 161894 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 || | | || || | || || | | || || |||| | ||| || || Sbjct 161893 TGCACGACCACGGCTCAGTGCAGAACGTGCGCGTGATCCCGGATGCCGTGAAGGAGAAGT 161834 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || || || ||||| |||||| ||||| || | || |||||||| || || || Sbjct 161833 ACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGTGCTCGATATGGCCGCCGACCGCGGCG 161774 Query 113212 GCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGC 113271 || |||| ||||| || | || | ||| | || ||||| ||||| Sbjct 161773 CCTACATTTGCCAAAGCCAGTCGCTCAACGTGCACATCGCCGAGCCGACGATCAGCAAGC 161714 Query 113272 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCC 113331 | | || |||||| | ||| ||||||||||||||||| ||||| ||||| ||||| | Sbjct 161713 TGACGTCCATGCACTTCTACGCGTGGAAGAAGGGTCTCAAGACGGGTATGTACTACCTGC 161654 Query 113332 G 113332 | Sbjct 161653 G 161653 >seq6 Length=416345 Score = 134 bits (148), Expect = 2e-26 Identities = 199/277 (72%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTG-AGAAGAAGCAGCT-CTTTGAAGCCATCC 102105 ||||| |||| ||| || ||||| | | ||||||| || || || | ||||| Sbjct 381981 CTCATCGACACGTACATCAAGGACCAGACCGTAGAAGAACCACCTTCTNCGCGACCATCG 382040 Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 102165 | || | || ||| | || ||||| || | ||||| | ||||||| || | Sbjct 382041 AGACGATCCCCTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACTTCGCGC 382100 Query 102166 CGCGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT-CTTCTC 102223 |||| | || || ||||| || |||| || || ||| ||||| ||||| |||||| Sbjct 382101 CGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTCGAGGGCATCTTACTTCTC 382160 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| |||| | |||||||||||||| || || ||||| || ||| |||| Sbjct 382161 GGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTT 382220 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| |||||||| ||||| ||||||||||| |||||| Sbjct 382221 CTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCAC 382257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620733150938240