Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq20 147 3e-30 seq6 100 3e-16 >seq20 Length=315411 Score = 147 bits (162), Expect = 3e-30 Identities = 331/492 (67%), Gaps = 33/492 (7%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||||||||| || || || | || | || ||||| ||||||||||| Sbjct 302349 AATCTGACGATCGAAACGACCCGGACGAAGAATGGCCTTGTCGAGAATGTCGACACGGTT 302290 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| | |||| || || | ||| ||| | || ||| |||||||| || ||| Sbjct 302289 CGTACCCGCAAGCACAACCACGCC---CTCGCTCGAGTTGAAGCCGTCCATCTCGACGAG 302233 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTT 11672 |||||||||| || | || ||||| || || |||||| | ||||| | Sbjct 302232 CAGCTGGTTGAGTGTGTTCTCTCGCTCGTCATT---------ACCACCAGA-GAACGTTC 302183 Query 11673 C-TTAC------------CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGT 11719 | |||| ||||||| || || ||||||||||| || || ||||| || Sbjct 302182 CCTTACTACGTGCACGAGCGACAGCATCGATTTCATCGATGAAGACAATGCACGGAGAGT 302123 Query 11720 TGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCT 11779 | || || || | ||| | ||||| |||||| || || ||||| || ||||||| Sbjct 302122 TTGCCCGAGCTTCACGGAACAAATCACGCACACGCGACGGACCCACACCGACAAACATCT 302063 Query 11780 CAACGAAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCT 11838 ||| ||| | | | | | || |||||| ||| || ||| ||| ||||| || | || Sbjct 302062 CAATGAAATCCGAGCCCGAAATACTGAA-GAATGGCACACTAGCTTCACCGGCCGTTGCC 302004 Query 11839 CGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATC 11898 ||||| || |||||||| || || || | || | || | ||| || |||||| Sbjct 302003 TTCGCGAGCAGGGTCTTACCAGTGCCCGGAGGTCCGACAAGCAAGGCACCCTTCGGGATC 301944 Query 11899 TTGGCACCACTTCCAAAGTAGCGC-TCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAG 11957 ||||||||| || | | ||| || || ||| |||||| || |||| |||| | Sbjct 301943 TTGGCACCAAGATCAGTGAATCGCTTCTGGTTTC-GGAGGAAATCAACAAACTCCATGAT 301885 Query 11958 TTCCTCCTTGGC 11969 ||||| ||| || Sbjct 301884 TTCCTTCTTCGC 301873 >seq6 Length=416345 Score = 100 bits (110), Expect = 3e-16 Identities = 170/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||||| || |||||||| || || Sbjct 382256 TGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCCG 382197 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAG-AAGATGCCCTCCACACA 119626 | ||||| ||||| ||||| | || || || || ||| ||||||||||| ||| Sbjct 382196 CGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGTAAGATGCCCTCGACAGC 382137 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGAC---TTGTCGAACCACTTGAGAG 119682 ||||| |||| | |||||| || || | | || | | |||| |||||||||| | Sbjct 382136 AGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAAGTCGCACCACTTGAGCG 382077 Query 119683 CCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTC 119741 |||||| |||||| || | ||||||| || | ||||| || | ||| || ||| Sbjct 382076 CCCAGTGGGCCTTCTTCTGCACACAGGGGATCGTCTCGATGGTCGCGNAGAAGGTGGTTC 382017 Query 119742 TT 119743 || Sbjct 382016 TT 382015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588967224257600