Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq12 233 2e-56 seq6 134 2e-26 >seq12 Length=344370 Score = 233 bits (258), Expect = 2e-56 Identities = 574/860 (67%), Gaps = 15/860 (2%) Strand=Plus/Plus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| ||| |||| |||||||| |||||||| Sbjct 162607 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTAC 162666 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||||| |||||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 162667 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 162726 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || || ||||| |||||||| ||| || || || ||||| |||| Sbjct 162727 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGNTGGTACAGCGCCTCGAACTCGTCAC 162784 Query 106722 CCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT 106781 || || | ||||||| ||||||| || || ||||| || ||| | || Sbjct 162785 CCCACGTNGTGTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGG 162844 Query 106782 CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CAC 106840 ||||||| ||||||||||| || || |||||||||| | | || ||||| | | | | Sbjct 162845 CCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGC 162904 Query 106841 CGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTG 106899 | || | |||| || ||||| || | | || |||||||| | ||| || ||||| Sbjct 162905 GGTGCAGC-TCGTTGCCGTGGTT-CTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTG 162962 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATA 106956 ||| ||||| ||||| | |||| || ||||| || | ||| | |||| ||||| Sbjct 162963 CCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATA 163022 Query 106957 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 107016 ||||| ||| |||| || ||||| ||||| || | | || | || || || || Sbjct 163023 ACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGT 163082 Query 107017 CCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 107074 || || | |||||| || | || | | | || | | | ||||| || || Sbjct 163083 GCCACGGATGTACGAG--TTNGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCG 163140 Query 107075 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 107134 |||||||| ||||| || |||| | | || || ||||||| || | ||| ||||| Sbjct 163141 GCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCN 163200 Query 107135 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 107194 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 163201 TCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAAC 163260 Query 107195 AGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACA 107254 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 163261 AGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCG 163320 Query 107255 GAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTT 107314 | || ||||| | | ||||||||||| || || |||| || ||| | || || Sbjct 163321 GCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGC 163380 Query 107315 TCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAG 107374 || || ||||| ||| || | || || |||||| || || |||| |||||| Sbjct 163381 TCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAG 163440 Query 107375 TAACCAAAATCATAGTCCCG 107394 || | | ||| |||| || Sbjct 163441 TAGTCGTACTCAAAGTCGCG 163460 >seq6 Length=416345 Score = 134 bits (148), Expect = 2e-26 Identities = 354/530 (67%), Gaps = 18/530 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 382556 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 382497 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 117104 |||| || || ||| | | || | || ||||| | |||| | |||||| || Sbjct 382496 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCAACGCCAAGCGCGTGGAGGAGGCG 382438 Query 117105 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 ||| | || | |||||||||||| | |||| ||||||||||| ||||| | Sbjct 382437 ATCGGCGCAGA-ACTCAATGTACTGGCACATGAGAGACGAGTTCATACCNATGAGCTCCA 382379 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | |||| || |||| | ||||| ||| | || || || | ||| ||| Sbjct 382378 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGT 382319 Query 117224 GGAT---AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 117277 |||| || |||| || || | || | |||| || | || | || | Sbjct 382318 GGATGCGAGACTCGG----GGAGCTTGTTGGCGAG--CTTGGAGTACAGCAGGCACGCGA 382265 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || |||||||||||| || || || || || || || ||||||| ||||| |||| Sbjct 382264 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 382205 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAG-AAGATACCC 117396 | || || |||||||| | ||| | |||| |||||| || || |||||| ||||| ||| Sbjct 382204 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGTAAGATGCCC 382145 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAACCA 117455 || ||| || ||||| | | ||||||||||| | ||| | | ||| |||| Sbjct 382144 TCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAAGTCGCACCA 382085 Query 117456 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGG 117505 || | ||||| | |||||||||| | ||| || | || | ||||| Sbjct 382084 CTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAGGGGATCGTCTCGATGG 382035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589972009286080