Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq247 197 1e-45 seq83 82.4 6e-11 >seq247 Length=71432 Score = 197 bits (218), Expect = 1e-45 Identities = 404/603 (67%), Gaps = 1/603 (0%) Strand=Plus/Minus Query 29789 CGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGT 29848 |||||||| ||| ||||||||||| || | || ||||| ||| || || || | |||| Sbjct 59798 CGAGCTGAACCTTAAGCGGTTCCACATGGTTCAAGTAGATGTGCGCATCGCCGATCGTGT 59739 Query 29849 GGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGT 29908 ||| || ||||| | ||||| ||||| || || || | || | || | || Sbjct 59738 GGATGAAGTCTCCAGCACGCAGCCCTGTGACCTGCGCGATGAGTCGAGTCAACAGCGCGT 59679 Query 29909 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 29968 |||| || |||||||| || || ||||| |||||||| | || | |||||| | ||| | Sbjct 59678 AGCTCGCAATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTGAGCGCTGGTACATCTGNC 59619 Query 29969 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA 30028 |||| ||||| |||| | ||||| ||||| || | |||| ||||| || || |||| Sbjct 59618 ACGANAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGACACGGCGGCAGCGCCA 59559 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | | || |||||||| || ||| ||||||||| | || | |||||| Sbjct 59558 TCTCCTTGAGATCCGCAGGGTTCCATGCCGACATGATGATGCGACGATCGTTTGGGTTCG 59499 Query 30089 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCC 30148 || ||| || | | | | ||||| || || ||| || ||||| || || Sbjct 59498 TCTTGAGCTTGTGAATGACCTCCGCNAGCTGGTCGACTCCCTGGCCNGAGTANTCGGCGT 59439 Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| |||||||| || || || || | ||| ||||| || ||||| ||||| || | Sbjct 59438 GCATGGTCGTGTACTTGGCACCAAAGTGGCGCCANTGGAAGCCATACACTGGTCCGAGAT 59379 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || |||| | || ||| || | | |||| | || |||| || || | | Sbjct 59378 CGCCAGCTTCACGATGNCCGAGACCGATGCTNTCCAGGTATTCCTTGGATCCATTNCCAT 59319 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| || | | ||||| || | | |||| ||||||| || |||| ||||| Sbjct 59318 CCCAAATGTGGATGCCCTTGTCCTGCAACGTCTTGGCGTTTGTGTCGCCACTGATGAACC 59259 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAAC 30387 ||| |||||| ||| ||||| | ||| || || | || ||||| || || ||||| Sbjct 59258 ACAACAGCTCTTCCGCGACGCCGCGCCAGAATACGCGNTTNGTCGTCAGCAGNGGGAANA 59199 Query 30388 TGT 30390 ||| Sbjct 59198 TGT 59196 >seq83 Length=171706 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/130 (78%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 52047 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52104 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 125262 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 125319 Query 52105 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52163 ||| | ||||||||||||||| ||| || | ||||| || |||||| ||||| ||||| Sbjct 125320 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGT-GTGCCCGGACCTGATCATG 125378 Query 52164 AACCCCCACG 52173 ||||| |||| Sbjct 125379 AACCCGCACG 125388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408611663807816