Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq575 120 2e-22 seq150 118 8e-22 seq436 84.2 2e-11 seq58 84.2 2e-11 >seq575 Length=11535 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||| ||| || || || ||||| || || || | || Sbjct 2006 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 1947 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || ||||| ||||| || |||| || | ||||||| Sbjct 1946 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 1887 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || |||| ||| || || | ||| Sbjct 1886 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTG 1827 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTACGTGT 48779 ||||| || ||||||| || || ||||| |||||||| |||||| |||| Sbjct 1826 ATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGGTGTGTGTGTGT 1776 >seq150 Length=112013 Score = 118 bits (130), Expect = 8e-22 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||| ||| || || || ||||| || || || | || Sbjct 90884 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 90825 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || ||||| ||||| || |||| || | ||||||| Sbjct 90824 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 90765 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || |||| ||| || || | ||| Sbjct 90764 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTG 90705 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 ||||| || ||||||| || || ||||| |||||||| |||||| Sbjct 90704 ATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGGTGTGT 90660 Score = 109 bits (120), Expect = 4e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||| ||| || || || ||||| || || || | || Sbjct 82387 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 82446 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || ||||| ||||| || |||| || | ||||||| Sbjct 82447 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 82506 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || |||| ||| || || | || Sbjct 82507 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACATCGAGTGTG 82566 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 ||||| || ||||||| || || ||||| ||||||||| ||| Sbjct 82567 ATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATCTTGT 82609 >seq436 Length=23449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || || || | || | || || | |||| Sbjct 876 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGC 935 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| ||||||| || | ||||||||||| ||||| Sbjct 936 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTC 995 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || ||| | | || || | ||| || || | ||| ||||| || || ||| Sbjct 996 TGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 1055 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | ||| || || || ||||||||| Sbjct 1056 AGAGTCTTGACGAAGATCTGCATC 1079 >seq58 Length=197190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || || || | || | || || | |||| Sbjct 84960 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGC 85019 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| ||||||| || | ||||||||||| ||||| Sbjct 85020 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTC 85079 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || ||| | | || || | ||| || || | ||| ||||| || || ||| Sbjct 85080 TGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 85139 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | ||| || || || ||||||||| Sbjct 85140 AGAGTCTTGACGAAGATCTGCATC 85163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932065929016