Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12 307 2e-78 seq6 226 5e-54 >seq12 Length=344370 Score = 307 bits (340), Expect = 2e-78 Identities = 990/1515 (65%), Gaps = 49/1515 (3%) Strand=Plus/Plus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| || |||| ||||| | | | ||| | ||| | ||| | || Sbjct 161958 GTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGG 162017 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 |||||| ||||||||| || || ||||| || || || || ||||| || || | Sbjct 162018 CTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAG 162077 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 ||| || ||| | ||| |||| || ||| | | | ||| | ||||||||||| Sbjct 162078 CAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCA 162137 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 ||| ||| ||| ||| ||| ||||||||| |||| |||||||| ||||| Sbjct 162138 GAGGCCGGAC--GTCGGCGTG----ACGCCCCACATGTCGTACTGGAAGATGCCCTTGCT 162191 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 |||||| ||||| ||| || ||| ||||| |||||||| || ||||| || || Sbjct 162192 CACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTCCATCGAGGC 162251 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 || || || || |||| | || || || || | | ||||||||| ||||| Sbjct 162252 CTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGNGCCTCGTC 162311 Query 213269 GGACGTGAAGG-GCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGC 213327 | | || | | | | |||| | |||| | || || || ||||| || ||||||| Sbjct 162312 GCTCTCAAACGCGTAGCC-CATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGC 162370 Query 213328 CGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCA--CTCCTCCAAGGGGTAAAAGTTGCA 213385 |||| || | ||| | |||||| ||| | | ||| | ||||| ||||| Sbjct 162371 CGATCGGGCGGTGGCGCAGGTTG--CTTCGCTCGGCCTCGGGGATCGGGTAGTAGTTGAT 162428 Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445 ||||||| ||||||||||||||| ||| | || ||||||| | | ||| | | Sbjct 162429 NTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTC----- 162483 Query 213446 ATTGAACACGTAGCCC---CCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502 ||||| || || | |||| | |||||||| | ||| |||||| || ||||| Sbjct 162484 -TTGAAGTCGAAGGTCTTGTCGTCGTTCACAAACTTGGACAGCGCGATGGACGCGAGGTT 162542 Query 213503 GCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGC 213561 ||| || || ||||| | | | | | |||||||| | | |||| ||| |||||||| Sbjct 162543 GCACACCGCGACCTCGTCGGGCGAC-GTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCG 162601 Query 213562 ATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGC 213620 | ||||| ||||| |||||||| ||||| ||| ||||| | || || |||||||| ||| Sbjct 162602 AGCGGATCGTGCCGAGGTTCTGCTGGTTCGAC-TTGCGGTTACACGAGTCCTTGTACAGC 162660 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||||| || | || ||||| | ||| ||| | || ||| | |||||| | | || Sbjct 162661 ATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCG 162720 Query 213681 TTGACCACCCGCCTGACAGCTC-CGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGA 213738 || || || | || | ||| | | || ||||||||| | ||| ||| | | || Sbjct 162721 CGGA----TCGTCTTGC-GCGCGCGGCCCTCGCGCTCGTACTGNTGGTACAGCGCCTCGA 162775 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGACACATGAGGCTCCAG 213797 | |||| ||||| ||| || ||||| | | |||| || | |||||||| Sbjct 162776 ACTCGTCACCCCACGTNGTGTAGAGACCCGGTGCCTCGTTCGGG-CAGAACAGGCTCCAC 162834 Query 213798 TCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 || |||| | || | || |||||| || || || | ||||| |||| |||||| Sbjct 162835 TCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGA 162894 Query 213858 TCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 || | | | | ||||| || ||| || || || || || || ||| Sbjct 162895 TCACGAGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAG 162951 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCG---CCC 213971 ||||| |||||||||||||| | || || || || | |||| | ||||||| ||| Sbjct 162952 ATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCC 163011 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 || ||||| | ||| |||||| | |||||| | ||| || || ||||| ||| Sbjct 163012 TGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGAC 163071 Query 214032 TGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCT 214091 ||||| || || || |||||| | || | | |||| || | || || Sbjct 163072 GAGCCGTTCGTGCCACGGATGTACGAGTTNGTCGCGCGGATGTTGTGCACGCTGACACCA 163131 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCC 214151 ||||| ||||| |||||||||| |||||| || | | || || |||||| | Sbjct 163132 ATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCG 163191 Query 214152 ATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCA 214211 || ||| || | | | |||| |||||| ||| ||||| || | | || ||| Sbjct 163192 ATCGAGTCNTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCG 163251 Query 214212 GAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTC 214271 | |||||| ||||| || | || || | | || | | || | | | ||| ||| Sbjct 163252 GCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTC 163311 Query 214272 TCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGC 214331 || || | | | |||||| ||||||||||| | |||| | || | ||| ||| Sbjct 163312 TCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGC 163371 Query 214332 TGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG---AGCAGGTAGGAGCGCTCCAGAGTC 214388 || || | ||| | | || ||| || | || ||||| || ||| || ||| Sbjct 163372 TGCGGGCGCTC--AGCGACC-TTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTC 163428 Query 214389 TTGAACCCAAAGTAG 214403 ||||| ||||||||| Sbjct 163429 TTGAAGCCAAAGTAG 163443 >seq6 Length=416345 Score = 226 bits (250), Expect = 5e-54 Identities = 561/843 (67%), Gaps = 17/843 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 382557 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 382498 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | || || | | | | ||| | | | || ||| | Sbjct 382497 CCAGTCGAACGGGTTCGACACCTTGTAGATCTTGGCAACGCCAAGCGCGTGGAGGAGGCG 382438 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| ||| | |||| ||||| | ||||||| | |||||| || ||||| ||| Sbjct 382437 ATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCNATGAGCTCCAC 382378 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | || ||||||||||| ||| || || || | | |||| | Sbjct 382377 CGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGTG 382318 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 | ||| ||||| | | | |||||| || | |||||| || |||| ||| || ||||| Sbjct 382317 GATGCGAGACTCGGGGAGCTTGTTG-GC--GAGCTTGGAGTACAGCAGGCACGCGAAGTC 382261 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | ||| | || ||||| || ||||||| |||| ||||||| ||| |||||||| | Sbjct 382260 GCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAG 382201 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG-AAGATGCCCTCCA 48260 || | || ||||||||||| || | ||| ||||| |||||| ||||||||||| | Sbjct 382200 GCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGTAAGATGCCCTCGA 382141 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCAGGAA 48319 | || ||||||||| || | ||| |||| | ||| | | | ||| Sbjct 382140 CAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAAGTCGCACCACTTG 382081 Query 48320 AGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA----G 48375 |||||||||| |||||||||| | || || |||||||| |||| | | ||| | Sbjct 382080 AGCGCCCAGTGGGCCTTCTTCTGCACACAGGGGATCGTCTCGATGGTCGCGNAGAAGGTG 382021 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTC 48432 ||||| || ||| |||| | || || |||||||| | ||||| ||| Sbjct 382020 GTTCTTCTAC-GGTCTG-GTCCTTGATGTACGTGTCGATGAGCAGC---GAGTACACCTC 381966 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || || |||||||| ||||||||| | |||||| ||||| Sbjct 381965 CGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCAGGAACCTG 381906 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || || ||| || | || ||||| ||||| || ||||| || || || Sbjct 381905 CACCTCGCTGCTGAAGTTCATCNCGAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAA 381846 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 ||| || || || || || | || | ||||||||||| ||||| |||||| ||| Sbjct 381845 GAACGCGAGCACGTGCTTGATAAAGTAGCGCTCGTTGTCCGTGAGGTTGTTCCAGTCCTT 381786 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 | ||| | | ||||| | ||||| | ||||||||| ||| || || ||||| Sbjct 381785 GAGGTCGTGCACGAGGTCGATCTCTTCAGCCGTCCAGAAGCTCGCCTCAGCCTTCTTGTA 381726 Query 48673 CAT 48675 ||| Sbjct 381725 CAT 381723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931518920161280