Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 176 8e-39 seq12 152 1e-31 >seq6 Length=416345 Score = 176 bits (194), Expect = 8e-39 Identities = 554/848 (65%), Gaps = 29/848 (3%) Strand=Plus/Plus Query 25486 ATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAG 25542 ||||||||||||||| | | || |||||| || |||||||| || || | | Sbjct 381723 ATGTACAAGAAGGCTGAGGCGAGCTT---CTGGACGGCTGAAGAGATCGACCTCGTGCAC 381779 Query 25543 GACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTG 25602 ||| | | | |||| || || | | |||||| | ||| ||||| ||||| | Sbjct 381780 GACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTTATCAAGCACGTGCTC 381839 Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATTCACCAG 25661 || ||||| || ||| |||||| || || |||||||| || | || || |||| ||| Sbjct 381840 GCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTC-GNGATGAACTTCAGCAG 381898 Query 25662 GGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATG 25720 || |||||| | | || |||| || |||||||| |||||||| || || || || Sbjct 381899 CGAGGTGCAGGTTCCTG-AGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGAACA 381957 Query 25721 TGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCG-AG 25776 | ||||| |||||||| | ||| || || |||||||| | ||| ||| || Sbjct 381958 TCCACTCGGAGGTGTACTC---GCTGCTCATCGACACGTACATCAAGGACCAGACCGTAG 382014 Query 25777 AGAGATCGGCTGTTTGGTG-CCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 | | | || | | | |||||||| || ||| | | ||| |||||| | || Sbjct 382015 AAGAACCACCTTCTNCGCGACCATCGAGACGATCCCCTGTGTGCAGAAGAAGGCCCACTG 382074 Query 25836 GGCCATGAAGTGGATCAACAGCCAGA-GCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| | |||||| | || | | |||| |||| | |||||| | || || || | Sbjct 382075 GGCGCTCAAGTGGTGCGACTTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCG 382134 Query 25895 CTGCTGTGGAGGGCATCTTT-TTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 ||||||| ||||||||||| ||| || ||||| ||| | ||||||||||||||| | Sbjct 382135 CTGCTGTCGAGGGCATCTTACTTCTCGGGCTCGTTCTGCT-CTATCTTCTGGCTCAAGAA 382193 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||| || || ||| || |||||||||||| | ||||||||||| Sbjct 382194 GCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCT 382253 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 |||| | || || || |||||||| ||| ||| | ||| || || | | || Sbjct 382254 CCACTGCGACTTCGCGTGCCTGCTGTAC----TCCAAGCTCGCCAACAAGCTCCCCGAGT 382309 Query 26073 GAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131 | | || || ||||| || ||||| | ||||||||||||||| Sbjct 382310 CTCGCATCCACGAGATCATTCGCGATGCTGTCGCGATCGAGAAGGAGTTCGTCCAGGACT 382369 Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATG 26191 | || |||||| |||||| |||| |||||||||| | Sbjct 382370 CGCTCCCGGTGGAGCTCATNGGTATGAACTCGTCTCTCATGTGCCAGTACATTGAGT-TC 382428 Query 26192 TG-GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCG 26250 || ||||| | || || | ||| || | |||| |||||| | | |||||| Sbjct 382429 TGCGCCGATCGCCTCCTCCACGCGCTTGGCGTTGCCAAGATCTACAAGGTGTCGAACCCG 382488 Query 26251 TTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTC 26310 ||||||| ||||| | || ||| | | || |||||||||||||| || ||| | || Sbjct 382489 TTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTG 382548 Query 26311 GGCGACTA 26318 ||||| || Sbjct 382549 GGCGAGTA 382556 >seq12 Length=344370 Score = 152 bits (168), Expect = 1e-31 Identities = 612/949 (64%), Gaps = 31/949 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| ||||| || |||||||| || |||| | | ||| |||||| Sbjct 162535 GCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGG 162594 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||| | ||| || || |||| | || || |||||||| || | ||||||| Sbjct 162595 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTG 162654 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| | || ||| ||||| | ||| | | | || ||| | |||||| | Sbjct 162655 TACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG- 162713 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATAC--CCGGTATAG 221947 ||| |||| | |||| ||| || | ||||| || | ||| |||| || Sbjct 162714 CTGCGCGCGGATCGTC---TTGCGCGCGCGGCCCTCGCGCT---CGTACTGNTGGTACAG 162767 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG--CGGGACACA 222005 || | | |||| ||||| ||| || || || || ||| | |||| || | Sbjct 162768 CGCCT--CGAACTCGTCACCCCACGTNGTGTAGAGACCCGGTG-CCTCGTTCGGG-CAGA 162823 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 ||| ||||| | |||| | | || | || ||||||||| || || ||||||| || Sbjct 162824 ACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCG 162883 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || ||||| | | || ||| ||| ||||| ||| ||| | || || | | Sbjct 162884 CGTAGAACAGATCACGAGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGA 162943 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| || ||||| |||||||||||||| ||||| | || | | ||| |||||| Sbjct 162944 ACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGC 163003 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 ||||||||||||||| | | || ||||||| | ||| || | || || || | Sbjct 163004 CGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGC 163063 Query 222246 CGTTGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TACTGG 222302 |||| || ||| ||||| ||||| ||||||| || | | || | | | Sbjct 163064 CGTTCGA-CGAGCCGTTCGTGCCACGGATGTACGAGTTNGTCGCGCGGATGTTGTGCACG 163122 Query 222303 CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | |||| || || || ||||| || ||||| |||||| |||||| ||||| Sbjct 163123 CTGACA--CCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCAT 163180 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||||||||| || ||||| ||||| | | ||||| || || ||||||| ||| | Sbjct 163181 AGATGCCCTCGATCGAGTCNTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGC 163240 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | | | |||||| |||||||| || | ||||| || ||| ||| ||||| Sbjct 163241 GCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGT 163300 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCA 222542 ||||||||||| | | | |||||| | | ||| || | ||| | || Sbjct 163301 ACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCA 163360 Query 222543 TGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGAG---AGCAGGTACGATT 222599 ||| | ||| || | || ||| ||||| | | | || |||||||| | Sbjct 163361 GAATCATCTGCTGCGGGCGCT---CAGCGACCTTGCCACCGACGCGCAGGAGGTACGACT 163417 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTG 222648 | || || |||||||| |||||||||| | |||||||| | | |||| Sbjct 163418 TCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGTG 163466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830960212480