Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq12 205 1e-47 seq6 134 2e-26 seq480 87.8 2e-12 >seq12 Length=344370 Score = 205 bits (226), Expect = 1e-47 Identities = 571/865 (66%), Gaps = 23/865 (3%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | |||||||| |||| || || |||||| || || | || Sbjct 163460 CGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGC 163401 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 ||| ||||| || || ||| ||| | ||| | |||| ||||| |||||||| Sbjct 163400 GTCGGTGGCAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATC 163341 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | | ||||| || | | | ||||| ||||| | ||||| ||| | | ||| Sbjct 163340 CACAAGCATGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTC 163281 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || ||||| || || || || | |||||| |||| ||| Sbjct 163280 ACGCACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGC 163221 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| |||||| ||||| ||||| ||| | || ||||||| || || | | |||| Sbjct 163220 TTCCTGCTCGCCATGAAGGANGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGC 163161 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 || ||||| |||||||| || || ||||| | | | || | | | || | Sbjct 163160 GCCTGCATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACN 163101 Query 75488 AAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 || ||||| || || || || || || || | || | | || ||||| |||| Sbjct 163100 AA--CTCGTACATCCGTGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCG 163043 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCG----TCGCAAGGGGTCCATC 75601 | || |||| ||| ||||| ||||| ||| || | |||| |||||||| || || Sbjct 163042 TGTTCAACGACACGGCGCGTTATGTGGATC-AGGGTGGCGGCAAGCGCAAGGGCTCGTTC 162984 Query 75602 GCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAA 75660 ||| | || | || || ||||| ||||| ||| | |||||||| || | | || || Sbjct 162983 GCGATGTATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGA-AGAA 162925 Query 75661 CCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACC 75719 ||| || ||| || || | | | | | ||||| || | | |||||||||| || | Sbjct 162924 CCACGGCAACG-AGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATC 162866 Query 75720 TTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCAC 75779 | ||||||||||| ||||||| || | ||| || ||||| || || |||||| Sbjct 162865 TCTTCATGAAGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCAC 162806 Query 75780 CAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 | ||||||| | || |||||| ||||| || || || ||| |||| || | Sbjct 162805 CGGGTCTCTACACNACGTGGGGTGACGAGTTCGAGGCGCTGTACCANCAGTACGAGCGCG 162746 Query 75840 AGGGTAGAGC---CAATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAA 75894 |||| | || ||| ||| | | | |||| || | ||| || || ||| | Sbjct 162745 AGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGC-----TCTGGTTCGCGATCCTCGA 162691 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 || |||| ||||| || || || || ||||| |||||||| | |||||| ||| Sbjct 162690 GTCGCAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGTAACCGCAAGTC 162631 Query 75955 TAACCAAAAGAATTTGGGAACAATC 75979 ||||| |||| | || || ||| Sbjct 162630 GAACCAGCAGAACCTCGGCACGATC 162606 >seq6 Length=416345 Score = 134 bits (148), Expect = 2e-26 Identities = 354/530 (67%), Gaps = 18/530 (3%) Strand=Plus/Plus Query 64997 CCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACA 65056 ||||| | || | || ||| | |||||||||| | ||||| | || |||| ||| Sbjct 382035 CCATCGAGACGATCCCCTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACT 382094 Query 65057 CAAAGTCTCGCTCC-TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT- 65114 | | ||| | ||||||||||| | | ||||| || ||| ||||| ||||| Sbjct 382095 TCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTCGAGGGCATCTTA 382154 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| |||| | ||| | |||||||| || || ||||| ||||| Sbjct 382155 CTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCT 382214 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC---CGT 65231 ||||||| || || || || || || || |||||||||||| || || || | | Sbjct 382215 CAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCT 382274 Query 65232 GGAGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAAACT---ATCCACGCCATCGT 65288 | | || |||| | || | || || |||| || ||||||| ||| | Sbjct 382275 GCTGTACTCCAAG--CTCGCCAACAAGCTCC----CCGAGTCTCGCATCCACGAGATCAT 382328 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 || || || | ||| ||||| | |||| || |||| | ||||| | ||||| Sbjct 382329 TCGCGATGCTGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTGGAGCTCAT 382388 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTG-TCGGATCGTCTCCTCA 65407 ||||||||||| |||| | |||||||||||| | || | ||||| |||||| Sbjct 382389 NGGTATGAACTCGTCTCTCATGTGCCAGTACATTGAGT-TCTGCGCCGATCGCCTCCTCC 382447 Query 65408 AACAAGTTGG-GGTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAAC 65466 | |||| | ||||| || | || | | ||| || || |||| ||||| | Sbjct 382448 ACGCGCTTGGCGTTGCCA-AGATCTACAAGGTGTCGAACCCGTTCGACTGGATGGACATG 382506 Query 65467 ATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || || | || |||||||||||||| |||||||| || || || || Sbjct 382507 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 382556 >seq480 Length=19529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 246/372 (66%), Gaps = 18/372 (5%) Strand=Plus/Plus Query 14421 AGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACC 14480 || ||||||| ||||| || || || | | ||| || | || | ||||||||||||| Sbjct 2961 AGAATGAAATTAAGGTTGCTCAGCTTGGTGGATACGTGTCCGAGCATTCTGCGTACCACC 3020 Query 14481 ATGGTGAAGT-ATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCA 14539 | |||||| | || | ||| ||||||| | || |||| | || | ||| Sbjct 3021 ACGGTGAACAGAGTCTCAACGG-CACGATTATCAACATGGCCCAAGATTTTGTGGGAAGC 3079 Query 14540 AACAACATTAACCT----TCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGG 14595 |||||||| | || ||| || || |||| |||||||| || || |||||| Sbjct 3080 AACAACATCCATCTGTTGTCTCCAAACG----GTCAGTTTGGTACTCGACTAGCGGGTGG 3135 Query 14596 TAAGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGA- 14654 ||| ||||| | | | | ||||| || || || || | || | ||| || || Sbjct 3136 TAAAGATGCAGCATCGCCTCGTTACATCTTTACGAACCT---CGAGCAA-CTCACACGAC 3191 Query 14655 ---TCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCA 14711 |||| || |||| |||| || | | | | || | ||||||||||||| || | Sbjct 3192 GCATCTTCGACCCTCTGGATAACGACAACTTGACATATCTCGACGATGATGGACAGTCGA 3251 Query 14712 TTGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTA 14771 |||| || || | || | || | | ||||||| ||||| ||||| |||||||| Sbjct 3252 TTGAGCCTGAATGGTATGTTCCGATCATTCCAATGGCACTCGTCAATGGTGGCGAGGGTA 3311 Query 14772 TCGGTACGGGTT 14783 |||| ||||||| Sbjct 3312 TCGGCACGGGTT 3323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560711112960