Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq81 134 4e-26 seq898 132 1e-25 seq172 109 2e-18 seq4 102 2e-16 >seq81 Length=173354 Score = 134 bits (148), Expect = 4e-26 Identities = 260/379 (69%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 302490 GTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTACGG 302548 ||| || || || || || || || |||||||||| | | |||| ||| | |||| Sbjct 88464 GTCCATACCATCTTCACCATACAAAAACTGAATGATCTCGC-CTTGAGCATTGCGGACGG 88522 Query 302549 TCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAAC 302608 | ||| |||| |||| | ||||| |||| | ||||||||| || |||| Sbjct 88523 TACCATCGTAACGTGTCATCACCGACTCCATGGCTTTGACAAGACGACGCTGGATGTAAC 88582 Query 302609 CAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGA 302668 | ||| || || || || || |||||||| | ||| ||||||||||||||||||||| Sbjct 88583 CGGTTTCAGCAGTCTTGACGGCAGTATCAATCAAACCTTCACGACCACCCATAGCATGGA 88642 Query 302669 AGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT 302728 |||| | ||||| ||| || ||| | | | ||| | |||||||||||||| || Sbjct 88643 AGAAGAACTCTTGCGGGGTCAGTCCCTTCAAATACGAGTTTTCAACGAAACCACGACTCT 88702 Query 302729 CGGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 | || ||| ||| || ||| |||| || || || || | | || || | Sbjct 88703 CNGGACCGAGATCATC---CTTTCCGTAGTGAGGAAGAGTTCTTCGGTTGAANCCATAAG 88759 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 | ||||||||||| || ||||||||||| |||| |||| ||| ||||| || || || | Sbjct 88760 GAATACGCTTTCCTTCGACGTTCTGCTGACCCACACACGCAATAATCTGGGAGATGTTAA 88819 Query 302846 AATCACTGCCCTTGGAGCC 302864 | | |||||||| || Sbjct 88820 TGTAAGATCCCTTGGAACC 88838 >seq898 Length=2913 Score = 132 bits (146), Expect = 1e-25 Identities = 260/379 (69%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 302490 GTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTACGG 302548 ||| || || || || || || || |||||||||| | | |||| ||| | |||| Sbjct 103 GTCCATACCATCTTCACCATACAAAAACTGAATGATCTCGC-CTTGAGCATTGCGGACGG 161 Query 302549 TCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAAC 302608 | ||| |||| |||| | ||||| |||| | ||||||||| || |||| Sbjct 162 TACCATCGTAACGTGTCATCACCGACTCCATGGCTTTGACAAGACGACGCTGGATGTAAC 221 Query 302609 CAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGA 302668 | ||| || || || || || |||||||| | ||| ||||||||||||||||||||| Sbjct 222 CGGTTTCAGCAGTCTTGACGGCAGTATCAATCAAACCTTCACGACCACCCATAGCATGGA 281 Query 302669 AGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT 302728 |||| | ||||| ||| || ||| | | | ||| | |||||||||||||| || Sbjct 282 AGAAGAACTCTTGCGGGGTCAGTCCCTTCAAATACGAGTTTTCAACGAAACCACGACTCT 341 Query 302729 CGGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 | || ||| ||| || ||| |||| || || || || | | || || | Sbjct 342 CAGGACCGAGATCATC---CTTTCCGTAGTGAGGAAGAGTTCTTCGGTTGAAACCATAAG 398 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 | ||||||||||| || ||||||||||| |||| |||| ||| ||||| || || || | Sbjct 399 GAATACGCTTTCCTTCGACGTTCTGCTGACCCACACACGCAATAATCTGGGAGATGTTAA 458 Query 302846 AATCACTGCCCTTGGAGCC 302864 | | |||||||| || Sbjct 459 TGTAAGATCCCTTGGAACC 477 >seq172 Length=101696 Score = 109 bits (120), Expect = 2e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| ||| ||||||||||| || || | ||| |||||||| || || || Sbjct 95060 CCGTGCGAGATCAGACAGTCACGCTCCATCTCTCCCATACGCAGACCACCTTCTCGCGCA 95119 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| |||||| || || || | || || ||| ||||| || | Sbjct 95120 CGACCCTCCATAGGCTGGCGCGTCAGCATCGTCACGGGGCCGCGCGAGCGCGAGTGGATC 95179 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | |||||||||||||||||||||||||| | |||||||||||||| Sbjct 95180 TTGTCGTCGACCATATGCTTGAGACGCTGGTAGAACGTCGGACCGATGAAGAT 95232 >seq4 Length=466381 Score = 102 bits (112), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| ||| || |||||||| || || | ||| |||||||| || || || Sbjct 9884 CCGTGCGAGATCAGACAGTCGCGCTCCATCTCTCCCATACGCAGACCACCTTCTCGCGCA 9943 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || || ||| ||||| || | Sbjct 9944 CGACCCTCCATNGGCTGGCGCGTCAGCATCGTCACGGGGCCGCGCGAGCGCGAGTGGATC 10003 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | |||||||||||||||||||||||||| | |||||||||||||| Sbjct 10004 TTGTCGTCGACCATATGCTTGAGACGCTGGTAGAACGTCGGACCGATGAAGAT 10056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471795121665704