Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq12 212 6e-50 seq575 120 3e-22 seq436 120 3e-22 seq150 120 3e-22 seq58 120 3e-22 seq378 91.5 1e-13 >seq12 Length=344370 Score = 212 bits (234), Expect = 6e-50 Identities = 950/1479 (64%), Gaps = 60/1479 (4%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| | ||||| ||||| | ||| |||||||| || || ||||| || || | Sbjct 161997 GTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGA 162056 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTC 138659 ||| |||||||| ||| | || || || || || | |||| || || | | Sbjct 162057 CGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGC 162116 Query 138660 CTTGAGCGACGACCAGTCCCACAAATCGC---TAGGTTTTTTGTTCCACATATCGTACTG 138716 |||||||| | ||||||||| | || | || | | |||||| |||||||| Sbjct 162117 CTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTG 162176 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 || || ||| || |||| ||| ||||| |||| || ||| | ||| Sbjct 162177 GAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGC 162236 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836 | ||| | ||||| | ||| || |||| | || ||| || | || ||||| Sbjct 162237 GAGCTCCATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAG 162296 Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCC 138896 | || |||||| ||||||| ||| || | | |||||||||| || || || Sbjct 162297 CTCGCGNGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACC 162356 Query 138897 TTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGA-CGCTTTTGCGGCTTCG---A 138952 |||||||| | |||| ||||| |||||||| || |||| |||| ||| | Sbjct 162357 CTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCT----CGGCCTCGGGGA 162412 Query 138953 TAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTAT 139012 | || || ||||| | ||||||| ||||| | || ||| ||| ||||| || | | Sbjct 162413 TCGGGTAGTAGTTGATNTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGT 162472 Query 139013 GCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTG 139071 | | | | | | || ||| | || ||||||||| || ||||| ||| Sbjct 162473 -CGTACAGCTTCTTGAAGTCGAAGGTC------TTGTCGTCGT-----TC-ACAAACTTG 162519 Query 139072 TTGACACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCG 139128 |||| || || || | |||||||||||| || |||||||| | || |||| ||| Sbjct 162520 --GACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCG 162576 Query 139129 ACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTT 139188 | | ||| || | || || | |||||| || | || || || || || Sbjct 162577 AGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 162636 Query 139189 CGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATA 139248 |||||||| | || ||||| ||||| ||||| ||||| || || | || | ||| | Sbjct 162637 CGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGG 162696 Query 139249 ATGAATTTGAACAAGTCC--CTA-GCTTGTAT----TTGACGCACGTAAAGTTCGTCGCG 139301 || |||| || | || || | || ||| ||| || | | ||||| Sbjct 162697 ATCGC---GAACCAGAGCTGCTGCGCGCGGATCGTCTTG-CGCGCGC---GGCCCTCGCG 162749 Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGAC 139360 |||||||| | ||| || | ||||| |||| |||| | | | ||| | | Sbjct 162750 CTCGTACTGNTGGTACAGCGCCTCGAACTCGT-CACCCCACGTNGTGTAGAGACCCGGTG 162808 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 || || || || | || ||| ||||||| |||| |||||| ||||||| |||| Sbjct 162809 CCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGAT 162868 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATGTTA 139479 | |||||||||| ||| | | || ||| || || | | || || || || | Sbjct 162869 CGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCT--CGTTGCCGTGGTT 162926 Query 139480 CGT-TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 | | || | || ||||| || || | ||| |||||||| || || ||||| || || | Sbjct 162927 CTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAA 162986 Query 139539 TGCGCCTTTCCGTTTGCC---ACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCG 139595 | ||| || || ||||| ||| ||||| || | || | | | ||||| ||||| Sbjct 162987 CGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCG 163046 Query 139596 CAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGC 139655 || ||| ||| | || ||| ||| | ||||| |||| ||||||| ||| || Sbjct 163047 CAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTNGTCGC 163106 Query 139656 TCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATC 139715 |||| || || || ||| || || |||||| | | ||||| || | |||| | Sbjct 163107 GCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACT- 163165 Query 139716 GCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 || | | || || || || || || ||| |||| ||| | || ||| ||||| | Sbjct 163166 GCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCNTCCTTCATGGCGAGCAGGAAGCACG 163225 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 |||| || ||||| | ||||||||| ||||| || || ||||||||||||| | Sbjct 163226 ACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGA 163285 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGAT 139892 || |||||| | |||||||| |||| ||| | || || ||| |||||| Sbjct 163286 AGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTT--GTGGAT 163343 Query 139893 ACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttt 139952 ||||||| ||| |||| | ||| || || || || || ||| ||| ||| Sbjct 163344 GCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCG 163403 Query 139953 tttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 || || ||||| || |||||| |||||||||| Sbjct 163404 CAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 163442 >seq575 Length=11535 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || ||||| || || || || || ||||| || || || | Sbjct 1786 ACCATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCG 1845 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || || || || Sbjct 1846 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGAC 1905 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||| || || || |||||||||||| | | |||| || || Sbjct 1906 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTAC 1965 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 1966 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 2016 >seq436 Length=23449 Score = 120 bits (132), Expect = 3e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || |||||||| || || | | Sbjct 1079 GATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTC 1020 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | || | || || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 1019 GGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCA 960 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| ||||| || ||||| |||||| | | | || || || || Sbjct 959 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAA 900 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || ||||| ||||| || ||| | ||| | || |||| || || | | ||||| Sbjct 899 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGTGGTGGTGCCATCGAGCC 840 Query 24943 AACG 24946 ||| Sbjct 839 CACG 836 >seq150 Length=112013 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || ||||| || || || || || || ||||| || || | | Sbjct 82605 GATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACACTCGATGTCGAGCCGTC 82546 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || ||||| || ||||| || || || || || || || Sbjct 82545 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 82486 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || |||||||||||| | | |||| || || || Sbjct 82485 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAA 82426 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 82425 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 82377 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || ||||| || || || || || ||||| || || || | Sbjct 90664 ACCATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCG 90723 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || || || || Sbjct 90724 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGAC 90783 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||| || || || |||||||||||| | | |||| || || Sbjct 90784 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTAC 90843 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 90844 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 90894 >seq58 Length=197190 Score = 120 bits (132), Expect = 3e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || |||||||| || || | | Sbjct 85163 GATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTC 85104 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | || | || || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 85103 GGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCA 85044 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| ||||| || ||||| |||||| | | | || || || || Sbjct 85043 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAA 84984 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || ||||| ||||| || ||| | ||| | || |||| || || | | ||||| Sbjct 84983 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGTGGTGGTGCCATCGAGCC 84924 Query 24943 AACG 24946 ||| Sbjct 84923 CACG 84920 >seq378 Length=32279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || || ||||| || ||||| || || || || || || || || ||| ||||||| Sbjct 18 GTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTGATCTTC 77 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || |||||||||||| | | |||| || || ||||| || ||||| ||| Sbjct 78 GCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAACATCCAGAAGGAGTCG 137 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||| ||||| |||| |||| || ||| Sbjct 138 ACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890896525760