Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq575 111 3e-19 seq150 111 3e-19 seq436 104 5e-17 seq58 104 5e-17 >seq575 Length=11535 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| || || || ||||| || || || || || Sbjct 2015 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 1956 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||| ||||| || | || || || || || Sbjct 1955 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 1896 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || |||||||| ||||| || || || |||| || || || || Sbjct 1895 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCGAC 1837 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| |||| |||||| ||||| |||||||| Sbjct 1836 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1789 >seq150 Length=112013 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| || || || ||||| || || || || || Sbjct 82378 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 82437 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||| ||||| || | || || || || || Sbjct 82438 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 82497 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || |||||||| ||||| || || || |||| || || || || Sbjct 82498 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCGAC 82556 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| |||| |||||| ||||| |||||||| Sbjct 82557 ATCGAGTGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 82604 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| || || || ||||| || || || || || Sbjct 90893 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 90834 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||| ||||| || | || || || || || Sbjct 90833 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 90774 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || |||||||| ||||| || || || |||| || || || || Sbjct 90773 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCGAC 90715 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| |||| |||||| ||||| |||||||| Sbjct 90714 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 90667 >seq436 Length=23449 Score = 104 bits (114), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || || || | ||| || || || || ||||| || || || || || Sbjct 851 ACCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 910 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || || || || || ||||| || | || ||||| ||||| Sbjct 911 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 970 Query 82703 TATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 ||||| ||||| || || ||||| ||||| ||||| ||||| | || ||| || | Sbjct 971 GATTCCCTCCTTGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGA 1029 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| |||| ||||| || || |||||||| Sbjct 1030 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 1078 >seq58 Length=197190 Score = 104 bits (114), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || || || | ||| || || || || ||||| || || || || || Sbjct 84935 ACCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 84994 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || || || || || ||||| || | || ||||| ||||| Sbjct 84995 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 85054 Query 82703 TATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 ||||| ||||| || || ||||| ||||| ||||| ||||| | || ||| || | Sbjct 85055 GATTCCCTCCTTGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGA 85113 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| |||| ||||| || || |||||||| Sbjct 85114 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 85162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981812205044088