Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq12 583 9e-162 seq436 143 3e-29 seq58 143 3e-29 seq575 123 2e-23 seq150 123 2e-23 seq378 87.8 2e-12 >seq12 Length=344370 Score = 583 bits (646), Expect = 9e-162 Identities = 1243/1832 (68%), Gaps = 41/1832 (2%) Strand=Plus/Plus Query 147952 TGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACG 148011 ||||||| |||||||| ||||||||||| ||| | ||| |||||| ||||| |||| Sbjct 161651 TGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACG 161710 Query 148012 ACATGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAATG 148070 || || |||||| | |||| | || || | ||||||||| ||| |||| Sbjct 161711 TCAGCTTGCTGATCGTCGGCT-CGGCGATGTGCACGTTGAGCGACTGGCTTTGGCAAATG 161769 Query 148071 AACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCGTC 148130 | ||||| ||||| |||||||| || | | ||| ||| |||||||| ||||| Sbjct 161770 TAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCCACACCGTC 161829 Query 148131 TTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGT-G 148189 |||||| | ||| | ||| || || || | | |||||| |||||| ||| | Sbjct 161830 TTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCG 161889 Query 148190 CGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGAT 148249 ||| | |||| || |||| ||| ||| | | | ||||||||| || || | || Sbjct 161890 TGCAGGA-TCTGGTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCAT 161948 Query 148250 CAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCT 148309 || |||| ||||| | | |||||||| || |||||||| || |||| |||| | Sbjct 161949 NAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGT 162008 Query 148310 CGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCAT 148369 ||| ||||| || | ||||||||||||||| | ||||||||||||| ||||| ||||| Sbjct 162009 CGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCAT 162068 Query 148370 GTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGC 148429 ||| | ||||||||||||||||| ||| | | || ||| || || || Sbjct 162069 CGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGC 162128 Query 148430 CCAGTCCCAGAG--CGG-CGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 |||||||||||| ||| || ||| || ||| ||||||||||||||| | ||||| Sbjct 162129 CCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTT 162188 Query 148487 GCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCT 148546 ||| |||| ||||||||| | |||||| |||||| || ||| || || || | Sbjct 162189 GCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CATCG 162247 Query 148547 CG-CCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGC-CGCC 148604 | |||| | ||||||| |||| | ||||||| || | | |||||||| ||| ||| Sbjct 162248 AGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCT-CGCGNGCC 162306 Query 148605 GACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCC 148663 ||||| || ||| | || | || | | |||||||| || || ||||| ||||| Sbjct 162307 TCGTCGCTCTCAAACG-CGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCC 162365 Query 148664 CACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAG---CGGATAGTG 148720 | ||| || || ||||| | |||| ||| || |||| | ||| |||| Sbjct 162366 GATGCCGATCGGGCGGTGGCGCAGGTTGCTT---CGCTCGGCCTCGGGGATCGGGTAGTA 162422 Query 148721 GTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAA 148780 |||| ||||||| ||||| || |||||| || ||||| || || | |||| Sbjct 162423 GTTGATNTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTT 162482 Query 148781 TTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATT 148837 | || ||| | |||||| || | | | || ||||| || || || || Sbjct 162483 CTTGAAGTCGAAGGTCTTGTCGTCGTTCACAAACTTGGACAGCGCGATGGACGCGAGGTT 162542 Query 148838 GCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCA 148897 |||||| || ||| || || | ||||||| | | |||| ||| || ||||| | Sbjct 162543 GCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGA 162602 Query 148898 TTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCAT 148957 |||| ||| | ||||| || || ||||| ||| |||| ||||||||||||||| Sbjct 162603 GCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCAT 162662 Query 148958 GTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGC 149014 |||||| ||| || || | ||||| || | || ||||| || | |||||| Sbjct 162663 GTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG---CTGCGC 162719 Query 149015 GCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACG 149073 ||| | | | ||| || ||| ||||| ||||||| |||||| ||||||| Sbjct 162720 GCGGATCGTCTTGCGCGC-GCGGCCCTCGCGCTCGTACTGNTGGTACAGCGCCTCGAACT 162778 Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133 | || || | || |||||| || || || |||||| | || |||| ||| Sbjct 162779 CGTCACCCCACGTNGTGTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGC 162838 Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193 ||| || | ||||||||||| || |||||||| | ||| | |||||| | || || | Sbjct 162839 CGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCAC 162898 Query 149194 G--CGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTC 149251 | ||| ||||| ||| ||| ||| |||| ||| | ||| ||||| Sbjct 162899 GAGCGCGGTGCAGC--TCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTC 162956 Query 149252 CGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCC---CTGGTC 149308 |||||||||||||| | |||| ||||| || |||||||||||||||||| ||| || Sbjct 162957 GGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATC 163016 Query 149309 GACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCC 149368 || | ||| || ||| ||| ||||| || | ||| || | | ||| | | | ||| Sbjct 163017 CACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCC 163076 Query 149369 GTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATG 149426 ||| || | ||| ||| | ||||| | | ||||||||| |||| || ||| Sbjct 163077 GTTCGTGCCACGGATGTACGAGTTNGTCGCGC--GGATGTTGTGCACGCTGACACCAATG 163134 Query 149427 CCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATG 149486 |||||| | |||| |||||| ||||| | |||||| |||||||||||||| Sbjct 163135 CCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATC 163194 Query 149487 CTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCC 149546 ||| |||||||| ||||| |||||||| ||| ||||| |||||||||| Sbjct 163195 GAGTCNTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCG 163254 Query 149547 GCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCG 149606 ||||| || || | ||||| || || | | || ||| |||||||| |||| Sbjct 163255 TTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCG 163314 Query 149607 AGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGC 149666 ||| || ||| ||||||| |||||||| | |||||||||| | ||| |||||| Sbjct 163315 AGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGC 163374 Query 149667 GGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAG 149726 || ||||| || || ||| || | || | ||| || || || |||||| || Sbjct 163375 GGGCGCTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAG 163434 Query 149727 CCAAAGTACTTGTAGTCAAAGTCGCGGCCGTG 149758 |||||||| | ||| |||||||||||| |||| Sbjct 163435 CCAAAGTAGTCGTACTCAAAGTCGCGGTCGTG 163466 >seq436 Length=23449 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | |||| | | | ||||||||||||||||| Sbjct 882 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCA-TCCTCGAGCTGCTTGCC 940 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || |||||||| || |||||||| |||||| ||||| Sbjct 941 GGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTT 1000 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||| | ||||| ||||||| |||| || |||||||||||||| Sbjct 1001 GACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGT 1060 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1061 CTTGACGAAGATCTGCAT 1078 >seq58 Length=197190 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | |||| | | | ||||||||||||||||| Sbjct 84966 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCA-TCCTCGAGCTGCTTGCC 85024 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || |||||||| || |||||||| |||||| ||||| Sbjct 85025 GGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTT 85084 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||| | ||||| ||||||| |||| || |||||||||||||| Sbjct 85085 GACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGT 85144 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 85145 CTTGACGAAGATCTGCAT 85162 >seq575 Length=11535 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || |||| | | | ||||| ||||||||||| Sbjct 1985 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 1927 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| |||||||| ||||| ||||| Sbjct 1926 AGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTT 1867 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | ||||| ||||| | |||| || ||||| ||||| || Sbjct 1866 CACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATCGTCTTGCCCGTCAGCGT 1807 Query 133643 TTTTACGAAAATCTGCATGG 133662 || || || |||||||||| Sbjct 1806 CTTCACAAAGATCTGCATGG 1787 >seq150 Length=112013 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || |||| | | | ||||| ||||||||||| Sbjct 90863 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 90805 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| |||||||| ||||| ||||| Sbjct 90804 AGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTT 90745 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | ||||| ||||| | |||| || ||||| ||||| || Sbjct 90744 CACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATCGTCTTGCCCGTCAGCGT 90685 Query 133643 TTTTACGAAAATCTGCATGG 133662 || || || |||||||||| Sbjct 90684 CTTCACAAAGATCTGCATGG 90665 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || |||| | | | ||||| ||||||||||| Sbjct 82408 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 82466 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| |||||||| ||||| ||||| Sbjct 82467 AGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTT 82526 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | ||||| || |||| |||| || ||||| ||||| || Sbjct 82527 CACGTTGTCGATCGAGTCCGACGGCTCGACATCGAGTGTGATCGTCTTGCCCGTCAGCGT 82586 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 82587 CTTCACAAAGATCTGCAT 82604 >seq378 Length=32279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || |||| | | | ||||| ||||||||||| Sbjct 139 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 81 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| |||||||| ||||| ||||| Sbjct 80 AGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413597030080