Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq231 127 5e-24 seq66 114 3e-20 >seq231 Length=77173 Score = 127 bits (140), Expect = 5e-24 Identities = 350/531 (66%), Gaps = 14/531 (3%) Strand=Plus/Plus Query 121129 CTTAATCTCGTCAAAGCGTGTCTGAGACCAATCACATGAATCCATCTTGTTGATTCCAAC 121188 ||| ||||||| | || | || ||||| || || || ||||||||||||| || || Sbjct 58309 CTTGATCTCGTTGTAACGAGCCTCCGACCAGTCGCACGAGTCCATCTTGTTGACACCGAC 58368 Query 121189 AATAACTTTCTCAATACCCAAAAGAGCAAGA--ATACGTGCGTGAAAACGTGTTTGACCT 121246 | | | ||||||||| | ||| |||| | ||| ||||| || || ||||| Sbjct 58369 GACGATCTGCTCAATACCGAG--GAGGAAGAGCAGACGAGCGTGCTGGCGCGTCTGACCC 58426 Query 121247 TGTGGGATTCCAGCAGAAC----GATCGCCTTTCGCAATAGCAGATTCAAAACCAttttt 121302 | || || || | | || | || || ||||| | || |||||| || Sbjct 58427 TCATCGACACC----GATCTTGGGGTCAGCCTTGGCGATAGCCGCCTCGAAACCACCCTT 58482 Query 121303 ttCAGCAGGAATAAGAATAAAAGCAGCATCGGCTT-GTCCGACGCCTGAAATCATATTCT 121361 || || || | ||| || | | | ||||| || | |||| || | |||||| |||| Sbjct 58483 CTCGGCCGGGACAAGGATGAGACCGGCATCAGCGCAGCCCGAACCC-GTAATCATGTTCT 58541 Query 121362 TAATAAAGTCAATATGGCCTGGTGCATCAATAATAGAATAATGATAAGAATCTGTGTAAA 121421 | || |||| ||||||| || ||||| | || | || || || || ||| | | Sbjct 58542 TGATGTAGTCCTTATGGCCAGGAGCATCGACGATCGTGTAGTGGTAGTTGTCCGTGAAGA 58601 Query 121422 ATTCCTTAGTATTACAATTTACTGTAATTCCGCGCTCACGCTCTTCCTTGTTGTTATCCA 121481 | ||||| || ||||| | | || | || ||||||||||| |||||| |||||| Sbjct 58602 ACTCCTTGGTGTTACACTGGATCGTCACACCACGCTCACGCTCCTCCTTGCACGTATCCA 58661 Query 121482 TGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTGCGTCGGCAAGTTCCTGCAACTTCG 121541 | || || || || || || || ||||| || || ||||| |||| | ||| | Sbjct 58662 TATAGTACGCGAAGGCGAACGACGACTTGCCCTTAGCATCGGCCTCAGCCTGGAGCTTGG 58721 Query 121542 CCATCTCACGAGCATTTATGCCTCCCAATTTAAAGATAAGATGACCGGTTGTTGTTGACT 121601 |||||||||| | || || || | || ||||| || || || || || || |||| Sbjct 58722 CCATCTCACGCTCGCCGATACCGCCGAGCTTGAAGATGAGGTGGCCCGTCGTCGTCGACT 58781 Query 121602 TTCCCGAGTCAACTTCACCACAGACCACCAAAGATATATGTTGCTTTTCAC 121652 | || | || || | || || ||||| | ||| | ||| |||||||||| Sbjct 58782 TGCCGGCATCGACGTGGCCGCACACCACAAGAGAAAGATGCTGCTTTTCAC 58832 >seq66 Length=186936 Score = 114 bits (126), Expect = 3e-20 Identities = 345/531 (65%), Gaps = 14/531 (3%) Strand=Plus/Minus Query 121129 CTTAATCTCGTCAAAGCGTGTCTGAGACCAATCACATGAATCCATCTTGTTGATTCCAAC 121188 ||| ||||||| | || | || ||||| || || || ||||||||||||| || || Sbjct 134279 CTTGATCTCGTTGTAACGAGCCTCCGACCAGTCGCACGAGTCCATCTTGTTGACACCGAC 134220 Query 121189 AATAACTTTCTCAATACCCAAAAGAGCAAGA--ATACGTGCGTGAAAACGTGTTTGACCT 121246 | | | ||||||||| | ||| |||| | ||| ||||| || || || || Sbjct 134219 GACGATCTGCTCAATACCGAG--GAGGAAGAGCAGACGNGCGTGCTGGCGCGTCTGNCCC 134162 Query 121247 TGTGGGATTCCAGCAGAAC----GATCGCCTTTCGCAATAGCAGATTCAAAACCAttttt 121302 | || || || | | || | || || ||||| | || |||||| || Sbjct 134161 TCATCGACACC----GATCTTGGGGTCAGCCTTGGCGATAGCCGCCTCGAAACCACCCTT 134106 Query 121303 ttCAGCAGGAATAAGAATAAAAGCAGCATCGGCTT-GTCCGACGCCTGAAATCATATTCT 121361 || || || | || || | | | ||||| || | |||| || | |||||| |||| Sbjct 134105 CTCGGCCGGGACNAGGATGAGACCGGCATCNGCGCAGCCCGANCCC-GTAATCATGTTCT 134047 Query 121362 TAATAAAGTCAATATGGCCTGGTGCATCAATAATAGAATAATGATAAGAATCTGTGTAAA 121421 | || |||| ||||||| || ||||| | || | || || || || ||| | | Sbjct 134046 TGATGTAGTCCTTATGGCCAGGNGCATCGACGATCGTGTAGTGGTAGTTGTCCGTGAAGA 133987 Query 121422 ATTCCTTAGTATTACAATTTACTGTAATTCCGCGCTCACGCTCTTCCTTGTTGTTATCCA 121481 | ||||| || ||||| | | || | || ||||| ||||| |||||| |||||| Sbjct 133986 ACTCCTTGGTGTTACACTGGATCGTCACACCACGCTCNCGCTCCTCCTTGCACGTATCCA 133927 Query 121482 TGTAATAAGCAAATGCAAAACTAGATTTGCCGTTTGCGTCGGCAAGTTCCTGCAACTTCG 121541 | || || || || || || || ||||| || || ||||| |||| | ||| | Sbjct 133926 TATAGTACGCGAAGGCGAACGACGACTTGCCCTTNGCATCGGCCTCAGCCTGGAGCTTGG 133867 Query 121542 CCATCTCACGAGCATTTATGCCTCCCAATTTAAAGATAAGATGACCGGTTGTTGTTGACT 121601 |||||||||| | || || || | || ||||| || || || || || || |||| Sbjct 133866 CCATCTCACGCTCGCCGATACCGCCGAGCTTGAAGATGAGGTGGCCCGTCGTNGTCGACT 133807 Query 121602 TTCCCGAGTCAACTTCACCACAGACCACCAAAGATATATGTTGCTTTTCAC 121652 | || | || || | || || ||||| | || | ||| ||||| |||| Sbjct 133806 TGCCGGCATCGACGTGGCCGCACACCACAAGNGAAAGATGCTGCTTNTCAC 133756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186794674401512