Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12 266 3e-66 >seq12 Length=344370 Score = 266 bits (294), Expect = 3e-66 Identities = 1188/1841 (65%), Gaps = 55/1841 (3%) Strand=Plus/Plus Query 146585 TGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATTGTGAATCGAA 146643 |||||| || ||||| ||||| ||||| || | || ||||| || ||| || || Sbjct 161651 TGCGCAGGTAGTACATACCCGTCTTGAGACC-CTTCTTCCACGCGTAGAAGTGCATGGAC 161709 Query 146644 GTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTATG 146703 |||| || | ||||||||| || | | | || | ||| |||||||| ||| Sbjct 161710 GTCAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTGAGCGACTGGCTTTGGCAAATG 161769 Query 146704 AAAGCGTTGCGGTCGGCCGCCATCTCAATCATG-CGTTTTGTCTTCATTTCCCAAGCGGT 146762 | ||| ||||||||| ||||| || | || | | || || ||| || ||||| | || Sbjct 161770 TAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTG-CTTGATCTCCCACACCGT 161828 Query 146763 TTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGT- 146821 |||||| | |||| ||| ||| || || | | ||| || | ||||| | || Sbjct 161829 CTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTC 161888 Query 146822 GCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAA 146881 | ||| | | ||| || | |||||||| | | | || | ||||| || | | Sbjct 161889 GTGCAGGATCTG-GTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCA 161947 Query 146882 TTAAATACTGATTGACCA-CTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTG 146940 | | |||| || || | | |||| |||||| || ||||| || | | |||| ||| Sbjct 161948 TNAGGTACTTGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCGGTTGTACATGTTG 162006 Query 146941 CTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGC 147000 | ||||| ||||| | ||||| || ||||| | || || || || | || || ||| Sbjct 162007 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGC 162066 Query 147001 ATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGATGTTGTCCTTCAAAGT 147059 || ||| | || || || || |||| |||||| || || | | || |||| | | Sbjct 162067 ATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCG-ACGCTGGCCTTGAGCGC 162125 Query 147060 TTGCCAGTCCCACATC---GACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 ||||||||| | |||| ||||| ||| ||||||||||||||||| | || Sbjct 162126 GGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCC 162185 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACA 147176 || |||| ||| || | | | ||| |||| || ||| | || || Sbjct 162186 CTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CA 162244 Query 147177 GCTTG-CCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCG 147235 | | |||| | ||| || |||| | || ||| ||| | ||||| || || | Sbjct 162245 TCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGNG 162304 Query 147236 CTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATA 147294 | || |||||||| || || || | || || | || || || || | |||||| | Sbjct 162305 CCTCGTCGCTCTCA-AACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACG 162363 Query 147295 CCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTG 147353 |||| |||||| || || || |||||| |||| || |||| || || |||| Sbjct 162364 CCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCGGC-CTCGGGGATCGGGTAGTA 162422 Query 147354 GTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTT 147413 |||| || || | |||||||||||| ||| || || || || || | || || Sbjct 162423 GTTGATNTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTT 162482 Query 147414 CTCGAAATCATAAGTCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGATAGACGCCA 147472 || ||| || | ||| ||| ||| ||| || |||| || ||||| ||||| | Sbjct 162483 CTTGAAGTCGAAGGTCTTGTCGTCGTTCACAAAC---TTGGA-CAGCGCGATGGACGCGA 162538 Query 147473 GATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTG 147531 | ||||| || || ||| |||| || || |||||| | | ||| ||| |||||| Sbjct 162539 GGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTCGCAGCAGAGGTTG 162597 Query 147532 CTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAG 147591 || | || || | || ||||| || || || || |||| ||| ||| | Sbjct 162598 CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTAC 162657 Query 147592 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AACCTATGCAGGTCC 147648 ||||||||||| ||| ||||||| |||| || | ||| |||| || | | Sbjct 162658 AGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG---C 162714 Query 147649 TGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCA 147708 ||||| || | | || || |||||||||| |||||| | | ||||| | ||| Sbjct 162715 TGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGNTGGTACAGCGCCTCG 162774 Query 147709 AACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 147768 |||||||| || | | || || || || | ||| || | ||| |||| Sbjct 162775 AACTCGTCACCCCACGTNGTGTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCAC 162834 Query 147769 ATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGA 147828 | ||| || | |||||| ||| || ||||| || | ||||| |||||| | ||| Sbjct 162835 TCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGA 162894 Query 147829 TCGCG--CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAG 147885 || || ||| |||| |||| ||| ||| || | | || | | | | || Sbjct 162895 TCACGAGCGCGGTGCAG--CTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGA-AG 162951 Query 147886 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCG---CCC 147942 |||||||||||||| || || | || | || | || || || ||||| ||| ||| Sbjct 162952 ATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCC 163011 Query 147943 TGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCA 148002 || || |||| ||| || ||| ||| |||||||||| |||||| | |||||| ||| Sbjct 163012 TGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGAC 163071 Query 148003 GTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCA 148062 | |||||| ||| | ||| | | || || | | ||||||| | || ||| Sbjct 163072 GAGCCGTTCGTGCCACGGATGTACGAGTTNGTCGCGCGGATGTTGTGCACGCTGACACCA 163131 Query 148063 ATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGTAGATGCCG 148119 ||||||||| | |||| || ||| ||||| | || | |||| |||||||| Sbjct 163132 ATGCCGCCGGCCCACTTGGAGATGCAGGCGCACT-GCTTGAGCGTGTC--ATAGATGCCC 163188 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| ||| | || | | | |||| || ||||| ||| ||||| | |||| Sbjct 163189 TCGATCGAGTCNTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTG 163248 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT-CATGCGATA 148238 || || ||| || || || |||||||||| || || |||| ||| | || || Sbjct 163249 CCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCG-TA 163307 Query 148239 CGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCAT 148298 |||||| | ||| | |||||||| | ||| ||||| | |||||||||| | ||| Sbjct 163308 CGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCAT 163367 Query 148299 GTGCTGTGGTCGTTCGGC-AACTTG--ATTGTTGATCTTGAGAAGATATCCATTTTCGAG 148355 ||||| || || || || | |||| | | | | || || || || ||||| Sbjct 163368 CTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGC---AGGAGGTACGACTTCTCGAG 163424 Query 148356 GGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGT 148396 || ||| | |||||||| | ||| ||||| || | |||| Sbjct 163425 CGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGT 163465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476604098493120