Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq150 138 1e-27 seq575 136 4e-27 seq378 100 3e-16 >seq150 Length=112013 Score = 138 bits (152), Expect = 1e-27 Identities = 175/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||| |||||||| | | || ||||| || | ||| |||||| || |||||||| || Sbjct 90897 ATTGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 90838 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | || || || | || ||||||||||| || || || |||| ||||||||||||| Sbjct 90837 CGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGG 90778 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATT 35684 || | || |||||||||| ||||| ||||||| |||| | | || ||| || | Sbjct 90777 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCT 90719 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 | || || | ||||||||| || ||||||| || |||||||| |||||||| |||| Sbjct 90718 CGACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGGTGTG 90661 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||| |||||||| | | || ||||| || | ||| |||||| || |||||||| || Sbjct 82374 ATTGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 82433 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | || || || | || ||||||||||| || || || |||| ||||||||||||| Sbjct 82434 CGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGG 82493 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATT 35684 || | || |||||||||| ||||| ||||||| |||| | | || ||| || | Sbjct 82494 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCT 82552 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | |||||||| || ||||||| || |||||||| |||||||| Sbjct 82553 CGACATCGAGTGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 82604 >seq575 Length=11535 Score = 136 bits (150), Expect = 4e-27 Identities = 172/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||| || |||||||| || | | Sbjct 2015 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 1956 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| ||||||||||||| || Sbjct 1955 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 1896 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| ||||| ||||||| |||| | | || ||| || || || Sbjct 1895 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCGAC 1837 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 || | ||||||||| || ||||||| || |||||||| |||||||| |||| Sbjct 1836 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATGGTGTG 1783 >seq378 Length=32279 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||| |||||||| | | || ||||| || | ||| |||||| || |||||||| || Sbjct 173 ATTGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 114 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | || || || | || ||||||||||| || || || |||| ||||||||||||| Sbjct 113 CGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGG 54 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660 || | || |||||||||| ||||| ||||||| Sbjct 53 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450786883175360