Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq12 239 6e-58 seq6 122 1e-22 >seq12 Length=344370 Score = 239 bits (264), Expect = 6e-58 Identities = 576/860 (67%), Gaps = 15/860 (2%) Strand=Plus/Plus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| ||| |||| |||||||| |||||||| Sbjct 162607 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTAC 162666 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTA 111434 ||||| |||||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 162667 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 162726 Query 111435 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | ||| || || ||||| |||||||| ||| || || || ||||| |||| Sbjct 162727 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGNTGGTACAGCGCCTCGAACTCGTCAC 162784 Query 111495 CCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT 111554 || || | ||||||| ||||||| || || ||||| || ||| | || Sbjct 162785 CCCACGTNGTGTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGG 162844 Query 111555 CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CAC 111613 ||||||| ||||||||||| || || |||||||||| | | || ||||| | | | | Sbjct 162845 CCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGC 162904 Query 111614 CGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGTG 111672 | || || ||| || ||||| || | | || |||||||| | ||| || ||||| Sbjct 162905 GGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTG 162962 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATA 111729 ||| ||||| ||||| | |||| || ||||| || ||| || | |||| ||||| Sbjct 162963 CCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATA 163022 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 ||||| ||| |||| || ||||| ||||| || | | || | || || || || Sbjct 163023 ACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGT 163082 Query 111790 CCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847 || || || ||||| || | || | | | || | | | ||||| || || Sbjct 163083 GCCACGGATGTACGAG--TTNGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCG 163140 Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907 |||||||| ||||| || |||| | | || || ||||||| || | ||| ||||| Sbjct 163141 GCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCN 163200 Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 111967 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 163201 TCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAAC 163260 Query 111968 AGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACA 112027 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 163261 AGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCG 163320 Query 112028 GAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTT 112087 | || ||||| | | ||||||||||| ||||| |||| | ||| | ||| ||| Sbjct 163321 GCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGC 163380 Query 112088 TCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAG 112147 || || ||||| ||| || | || || |||||| || || |||| |||||| Sbjct 163381 TCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAG 163440 Query 112148 TAACCAAAATCATAGTCCCG 112167 || | | ||| |||| || Sbjct 163441 TAGTCGTACTCAAAGTCGCG 163460 >seq6 Length=416345 Score = 122 bits (134), Expect = 1e-22 Identities = 351/530 (66%), Gaps = 18/530 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 382556 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 382497 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 |||| || || ||| | | || | || ||||| | |||| | |||||| || Sbjct 382496 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCAACGCCAAGCGCGTGGAGGAGGCG 382438 Query 122490 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 ||| | || | |||||||||||| | |||| ||||||||||| ||||| | Sbjct 382437 ATCGGCGCAGA-ACTCAATGTACTGGCACATGAGAGACGAGTTCATACCNATGAGCTCCA 382379 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | |||| || |||| | ||||| ||| | || || || | ||| ||| Sbjct 382378 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGT 382319 Query 122609 GGAT---AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 122662 |||| || |||| || || | || | |||| || | || | || | Sbjct 382318 GGATGCGAGACTCGG----GGAGCTTGTTGGCGAG--CTTGGAGTACAGCAGGCACGCGA 382265 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || |||||||||||| || || || || || || || ||||||| || || |||| Sbjct 382264 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 382205 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAG-AAGATACCC 122781 | || || |||||||| | ||| | |||| |||||| || || |||||| ||||| ||| Sbjct 382204 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGTAAGATGCCC 382145 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCA 122840 || ||| || ||||| | | || |||||||| | ||| | | || |||| Sbjct 382144 TCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAAGTCGCACCA 382085 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGG 122890 || | ||||| | |||||||||| | ||| || | || | ||||| Sbjct 382084 CTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAGGGGATCGTCTCGATGG 382035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022642323200