Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12 264 1e-65 seq6 183 4e-41 seq20 95.1 1e-14 >seq12 Length=344370 Score = 264 bits (292), Expect = 1e-65 Identities = 769/1162 (66%), Gaps = 44/1162 (4%) Strand=Plus/Plus Query 118485 GCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGA 118542 ||||||||| ||||||||| || | || | || || | ||||||||||| || | Sbjct 162304 GCCTCGTCGCTCTCAAACGCGTAGCC--CATGAGGATGAACGCGTCCGCGAGACCCTGCA 162361 Query 118543 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGAT 118599 | |||| ||| || ||||| || | || || |||| | ||| ||| | || | Sbjct 162362 CGCCGATGCCGATCGGGCGGTGGCGCAGGTTG--CTTC-GCTCGGCCTCGGGGATCGGGT 162418 Query 118600 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 118659 | | || | ||||| ||| | || || || ||||| ||||| ||||| || | | Sbjct 162419 AGTAGTTGATNTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACA 162478 Query 118660 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 118719 |||| | | | || || | | || || || ||| |||| | || ||||| |||| Sbjct 162479 GCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTTCACAAACTTGGACAGCGCGATGGACG 162535 Query 118720 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGT 118779 | || || ||||| | | ||| || |||||||| | | || ||| | || Sbjct 162536 CGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGT 162595 Query 118780 TTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 | ||| || ||||| | ||||| || || ||||| |||||||| |||| Sbjct 162596 TG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCT 162652 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| |||||||| ||||| |||||||| | || |||| ||| || || ||||| Sbjct 162653 TGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA--- 162709 Query 118897 CGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 || |||| || | | | | ||| || || ||||| |||||||| ||| || Sbjct 162710 --GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGNTGGTACAG 162767 Query 118952 GGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 || || ||||| |||||| ||| | | |||| || ||||||| | |||||||| | Sbjct 162768 CGCCTCGAACTCGTCACCCCACGTNGTGT-AGAGACCCGGTGCCTCGTTCGGGCAGAACA 162826 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | || ||||||| |||||||||||||| || || ||||| | ||| Sbjct 162827 GGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGT 162886 Query 119071 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 |||| ||||| ||| ||| || || | | || || || | || | || Sbjct 162887 AGAACAGATCACGAGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCGAGGAAC 162945 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGA 119186 || | ||| || ||||||||||| || || |||| ||||| || ||||| || | Sbjct 162946 TCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCG 163005 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 ||| |||| | ||||| | ||| ||| |||| || || || ||||| || | || || Sbjct 163006 CCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCG 163065 Query 119247 TCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 | || ||| || || || || || ||||| || | || | || | ||| | | Sbjct 163066 TTCGACGAGCCGTTCGTGCCACGGATGTACGAG--TTNGTCGCGCGGATGTTGTGCACGC 163123 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 | |||||| || || |||||||| ||||| ||||||| | |||| || | |||| Sbjct 163124 TGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGA 163183 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || ||||||||||| |||| | |||| |||||||| ||||| || || | | Sbjct 163184 TGCCCTCGATCGAGTCNTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCG 163243 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGT 119484 | || || |||||||| || || || |||||||| |||| | | ||| ||||| | | Sbjct 163244 GCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACT 163303 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 |||| ||||| | ||||| ||||| | | ||| || |||| | ||| |||| || Sbjct 163304 CGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAA 163363 Query 119545 ACATGTATTG-GGGTGTTTCCATC-AGGATACCATCGAGCCTCTGGAGGTAACTCTTCTC 119602 ||| | || ||| | | || | | | ||| ||| | | ||||||| |||||| Sbjct 163364 TCATCTGCTGCGGGCGCT--CAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTC 163421 Query 119603 CAAGGTCTTGAGACCAAAATAG 119624 | ||||||| ||||| ||| Sbjct 163422 GAGCGTCTTGAAGCCAAAGTAG 163443 >seq6 Length=416345 Score = 183 bits (202), Expect = 4e-41 Identities = 366/531 (69%), Gaps = 24/531 (5%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 382556 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 382497 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCA-CTCCAATCTGTTTGAGGAGACG 129846 | || || |||||| || | || ||||| | |||| | | |||||| || Sbjct 382496 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCAACGCCAAGCGCGTGGAGGAGGCG 382438 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | | | |||||||||||| |||| ||||||||||| ||||| | Sbjct 382437 ATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCNATGAGCTCCAC 382378 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| |||| || |||| ||||||| || | ||||| || || | ||| |||| Sbjct 382377 CGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGTG 382318 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA---- 130018 ||| | ||| | | || | | ||| || |||| |||| | | |||| Sbjct 382317 GATGCGAGACTCGGGG--AGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCG 382266 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || |||||||||||||||||| |||||||| || |||||||||| || || ||| Sbjct 382265 AAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 382206 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG-AAGATCCC 130137 || || || |||||||| | |||||| || | || || ||||| |||||| ||||| || Sbjct 382205 ATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGTAAGATGCC 382146 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGAGCGGGACTTTGTATCAAA 130194 ||| ||| |||||||| | || |||||| || || || |||| | | || | Sbjct 382145 CTCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAAG--TCGCA 382088 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGAT 130245 |||||| | |||||| || ||||| |||| | ||| |||| |||| ||| Sbjct 382087 CCACTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAGGGGATCGTCTCGAT 382037 >seq20 Length=315411 Score = 95.1 bits (104), Expect = 1e-14 Identities = 282/427 (66%), Gaps = 15/427 (4%) Strand=Plus/Minus Query 14050 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 14109 ||| || |||| |||||| || ||||| || || || | ||| | ||| || || || | Sbjct 302355 CACAGTAATCTGACGATCGAAACGACCCGGACGAAGAATGGCCTTGTCGAGAATGTCGAC 302296 Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCCCGT-CTCGTTATCAAAGCCATCCATCTCAG 14168 |||||||| |||| | ||||| | |||| |||| | || ||| |||||||| | Sbjct 302295 ACGGTTCGTACCCGCAAGCACAACCACGCCCTCGCTCGAGTTGAA-GCCGTCCATCTC-G 302238 Query 14169 TCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCAC----CCGC 14223 | || || || |||| || | || || || ||||| || || | || || Sbjct 302237 ACGAGCAGCTGGTTGAGTGTGTTCTCTCGCTCGTCATTACCAC-CAGAGAACGTTCCCTT 302179 Query 14224 ACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC 14283 ||| ||| | |||| || || |||||||||||||| || || || || ||| | Sbjct 302178 ACTACGTGCACGAGCGACAGCATCGATTTCATCGATGAAGACAATGCACGGAGAGTTTGC 302119 Query 14284 ACGGGCAACTTCA---AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTC 14340 || || |||| || | ||| ||||| | | | ||| ||||| ||||||||||| Sbjct 302118 CCGAGC---TTCACGGAACAAATCACGCACACGCGACGGACCCACACCGACAAACATCTC 302062 Query 14341 CACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCG 14400 | |||| | | | ||| || ||| || || ||| |||||| || | || Sbjct 302061 AATGAAATCCGAGCCCGAAATACTGAAGAATGGCACACTAGCTTCACCGGCCGTTGCCTT 302002 Query 14401 GGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCT 14460 ||||| |||||||| || || || || || | || | |||||| |||||| | Sbjct 302001 CGCGAGCAGGGTCTTACCAGTGCCCGGAGGTCCGACAAGCAAGGCACCCTTCGGGATCTT 301942 Query 14461 GGCACCA 14467 ||||||| Sbjct 301941 GGCACCA 301935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425985315520