Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12 219 5e-52 seq6 134 2e-26 seq1 91.5 2e-13 >seq12 Length=344370 Score = 219 bits (242), Expect = 5e-52 Identities = 501/745 (67%), Gaps = 13/745 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| | ||||||| || |||| || || | | ||||| || | | Sbjct 163377 CCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGACATCGACGCCGC 163318 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||||| | ||||| ||| | | |||| ||||| || || || || || Sbjct 163317 GCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTT 163258 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || |||| |||||||| |||||| ||||| || Sbjct 163257 CAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGANGA 163198 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||||| || || | | |||| || ||||| |||||||| || Sbjct 163197 CTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGG 163138 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 || ||||| | | | || | | | || | || |||||| | || || || Sbjct 163137 CGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACNAA--CTCGTACATCCGTGGCACG 163080 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || | | || ||||| ||||| || |||| ||| ||||| ||| Sbjct 163079 AACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTAT 163020 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || |||| | ||| | || ||||| || |||| | ||||| ||||| |||||| Sbjct 163019 GTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTGGCAC 162960 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || ||| | |||||||| || | ||||| || ||||| | | | | || Sbjct 162959 GCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAACGAGCTG-CACCGCGC 162901 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 || ||||| |||| ||| | |||||||| ||||||||||||||| | ||||||| | Sbjct 162900 TCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTGAGGCCAA 162841 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT-GGGTG 104813 ||| | ||| || || || || || ||||||| ||||||| | | ||| ||||| Sbjct 162840 CGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCTCTAC-ACNACGTGGGGTG 162782 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | ||||| || || || ||| |||||||| || || || ||| |||| | | Sbjct 162781 ACGAGTTCGAGGCGCTGTACCANCAGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATCC 162722 Query 104874 CAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || || | | | ||| || || ||| |||| || | |||||| || || || ||| Sbjct 162721 GCGC-GCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTAC 162663 Query 104933 ATGCTTTACAAAGACGCCTGTAACC 104957 ||||| ||||| ||| | ||||||| Sbjct 162662 ATGCTGTACAAGGACTCGTGTAACC 162638 >seq6 Length=416345 Score = 134 bits (148), Expect = 2e-26 Identities = 199/277 (72%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTG-AGAAGAAGCAGCT-CTTTGAAGCCATCC 94729 ||||| |||| ||| || ||||| | | ||||||| || || || | ||||| Sbjct 381981 CTCATCGACACGTACATCAAGGACCAGACCGTAGAAGAACCACCTTCTNCGCGACCATCG 382040 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 94789 | || | || ||| | || ||||| || | ||||| | ||||||| || | Sbjct 382041 AGACGATCCCCTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACTTCGCGC 382100 Query 94790 CGCGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT-CTTCTC 94847 |||| | || || ||||| || |||| || || ||| ||||| ||||| |||||| Sbjct 382101 CGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTCGAGGGCATCTTACTTCTC 382160 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| |||| | |||||||||||||| || || ||||| || ||| |||| Sbjct 382161 GGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTT 382220 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| |||||||| ||||| ||||||||||| |||||| Sbjct 382221 CTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCAC 382257 >seq1 Length=655053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 169312 GAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACC 169371 |||||| | | | | || ||||| || ||| ||| ||||| || |||||||| || Sbjct 286233 GAGCTGCGCGTCCGTCGCGTCGCGCACGTTCAGCACCTTGCCACGCAGCGGGAAGACGCC 286174 Query 169372 GTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACC 169431 ||| | || || || ||||| | ||| |||||||||||||| | ||| |||||||| || Sbjct 286173 GTACTTGTCGCGTCCGACGACCGCGAGTCCCGCGACTGCGAGCGCCTTGGCCGAGTCNCC 286114 Query 169432 CTCGGTGACGATGAGCG 169448 || |||| ||| |||| Sbjct 286113 TTCCGTGAGGATCAGCG 286097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583252109414080