Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq247 185 7e-42 seq83 84.2 2e-11 >seq247 Length=71432 Score = 185 bits (204), Expect = 7e-42 Identities = 401/603 (67%), Gaps = 1/603 (0%) Strand=Plus/Minus Query 29862 CGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGT 29921 |||||||| ||| ||||||||||| | | || ||||| ||| || || || | ||| Sbjct 59798 CGAGCTGAACCTTAAGCGGTTCCACATGGTTCAAGTAGATGTGCGCATCGCCGATCGTGT 59739 Query 29922 GGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGT 29981 ||| || ||||| | ||||| ||||| || || || | || | || | || Sbjct 59738 GGATGAAGTCTCCAGCACGCAGCCCTGTGACCTGCGCGATGAGTCGAGTCAACAGCGCGT 59679 Query 29982 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 30041 |||| || |||||||| || || ||||| |||||||| | || | |||||| | ||| | Sbjct 59678 AGCTCGCAATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTGAGCGCTGGTACATCTGNC 59619 Query 30042 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA 30101 |||| ||||| |||| | ||||| ||||| || | ||| ||||| || || |||| Sbjct 59618 ACGANAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGACACGGCGGCAGCGCCA 59559 Query 30102 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 | | || |||||||| || ||| ||||||||| | || | |||||| Sbjct 59558 TCTCCTTGAGATCCGCAGGGTTCCATGCCGACATGATGATGCGACGATCGTTTGGGTTCG 59499 Query 30162 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCC 30221 || ||| || | | | | ||||| || || ||| || ||||| || || Sbjct 59498 TCTTGAGCTTGTGAATGACCTCCGCNAGCTGGTCGACTCCCTGGCCNGAGTANTCGGCGT 59439 Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| |||||||| || || || || | ||| ||||| || ||||| ||||| || | Sbjct 59438 GCATGGTCGTGTACTTGGCACCAAAGTGGCGCCANTGGAAGCCATACACTGGTCCGAGAT 59379 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 | || |||| | || ||| || | | |||| | || |||| || || | | Sbjct 59378 CGCCAGCTTCACGATGNCCGAGACCGATGCTNTCCAGGTATTCCTTGGATCCATTNCCAT 59319 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| || | | ||||| || | | |||| ||||||| || |||| ||||| Sbjct 59318 CCCAAATGTGGATGCCCTTGTCCTGCAACGTCTTGGCGTTTGTGTCGCCACTGATGAACC 59259 Query 30402 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAAC 30460 ||| |||||| ||| ||||| | ||| || || | || ||||| || || ||||| Sbjct 59258 ACAACAGCTCTTCCGCGACGCCGCGCCAGAATACGCGNTTNGTCGTCAGCAGNGGGAANA 59199 Query 30461 TGT 30463 ||| Sbjct 59198 TGT 59196 >seq83 Length=171706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/138 (78%), Gaps = 7/138 (5%) Strand=Plus/Plus Query 52761 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52818 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 125262 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 125319 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52877 ||| | ||||||||||||||| ||| || | ||||| || |||||| ||||| ||||| Sbjct 125320 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGT-GTGCCCGGACCTGATCATG 125378 Query 52878 AACCCCCACGCCTTTCCC 52895 ||||| |||| |||||| Sbjct 125379 AACCCGCACG-GTTTCCC 125395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406304497325664