Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq575 98.7 9e-16 seq150 98.7 9e-16 >seq575 Length=11535 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || | || || || | || || Sbjct 1998 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATCCTC 1939 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | || ||| |||||| Sbjct 1938 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1879 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||||| || | ||| | | | || || || ||| ||||| | |||||| | | Sbjct 1878 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATCGTCT 1820 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || |||||||| ||||| Sbjct 1819 TGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1789 >seq150 Length=112013 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || | || || || | || || Sbjct 90876 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATCCTC 90817 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | || ||| |||||| Sbjct 90816 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 90757 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||||| || | ||| | | | || || || ||| ||||| | |||||| | | Sbjct 90756 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCGACGTCAAGCGTGATCGTCT 90698 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || |||||||| ||||| Sbjct 90697 TGCCCGTCAGCGTCTTCACAAAGATCTGCAT 90667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || | || || || | || || Sbjct 82395 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCATCCTC 82454 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | || ||| |||||| Sbjct 82455 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 82514 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||||| || | ||| | | | || || || ||| || || | ||||| | | Sbjct 82515 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCGACATCGAGTGTGATCGTCT 82573 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||||||||| || |||||||| |||||||| Sbjct 82574 TGCCCGTCAGCGTCTTCACAAAGATCTGCATCTT 82607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429539359776296