Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq575 145 2e-29 seq150 145 2e-29 seq436 136 9e-27 seq58 136 9e-27 seq378 107 5e-18 >seq575 Length=11535 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || || Sbjct 2010 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGT 1951 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 1950 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCC 1891 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | || ||||| | Sbjct 1890 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAG 1831 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 |||||||||||||||||||| Sbjct 1830 CGTGATCGTCTTGCCCGTCA 1811 >seq150 Length=112013 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || || Sbjct 90888 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGT 90829 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 90828 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCC 90769 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | || ||||| | Sbjct 90768 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACGTCAAG 90709 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 |||||||||||||||||||| Sbjct 90708 CGTGATCGTCTTGCCCGTCA 90689 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || || Sbjct 82383 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGT 82442 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 82443 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCC 82502 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | || || || | Sbjct 82503 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCGACATCGAG 82562 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||||||||||||||||| Sbjct 82563 TGTGATCGTCTTGCCCGTCA 82582 >seq436 Length=23449 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || | | || | ||||| Sbjct 867 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCC 926 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || || || |||||||| Sbjct 927 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCC 986 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| ||| || ||| |||| || | || ||||| | |||||||||| Sbjct 987 TGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTC 1046 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| ||| || | ||| | ||||| || Sbjct 1047 TTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 1081 >seq58 Length=197190 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || | | || | ||||| Sbjct 84951 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCC 85010 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || || || |||||||| Sbjct 85011 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCC 85070 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| ||| || ||| |||| || | || ||||| | |||||||||| Sbjct 85071 TGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTC 85130 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| ||| || | ||| | ||||| || Sbjct 85131 TTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 85165 >seq378 Length=32279 Score = 107 bits (118), Expect = 5e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || || Sbjct 164 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGT 105 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || ||||| ||||| || || Sbjct 104 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCC 45 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCAC 225638 |||||||| || ||||| |||||||| Sbjct 44 CTCCTTGTCCTGAATCTTCTGCTTCAC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192512987067248